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[180364_s_at]

Description F23C8.6 /REP_DB=WormBase Gene ID /WP=CE20715 /TR=Q9TXI3 /GB=AAD03134.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 77      6grp_total > 49      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 325
1 2 3 4 range
A 1080.4
(2.2)
P 		999.2
(0.1)
P 		877.4
(-3)
P 		1110.6
(3)
P 		233
B 1200
(3)
P 		935.9
(-3)
P 		962
(-2.4)
P 		1201.9
(3)
P 		266
C 1142.1
(1.4)
P 		1063.9
(-1.4)
P 		1189.1
(3)
P 		1017.5
(-3)
P 		172
avr 1140.8
(3) 		999.7
(-3) 		1009.5
(-2.6) 		1110
(1.7) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 826
1 2 3 4 5 6 range
A 1463
(2.4)
P 		1133.2
(-3)
P 		1132.9
(-3)
P 		1437.3
(1.9)
P 		1431.6
(1.8)
P 		1502.5
(3)
P 		370
B 1461.6
(3)
P 		966.3
(-3)
P 		1273
(0.7)
P 		1133.8
(-1)
P 		1417.5
(2.5)
P 		1313.8
(1.2)
P 		495
C 1791.9
(3)
P 		974.8
(-3)
P 		1248.5
(-1)
P 		1010.3
(-2.7)
P 		1390.9
(0.1)
P 		1452.7
(0.5)
P 		817
avr 1572.2
(3) 		1024.8
(-3) 		1218.1
(-0.9) 		1193.8
(-1.1) 		1413.3
(1.3) 		1423
(1.4) 		547
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 393.4
(3)
P 		216.9
(-1.6)
P 		229.4
(-1.3)
P 		162.6
(-3)
P 		231
B 382.7
(3)
P 		231.2
(-2.7)
P 		222.9
(-3)
P 		256.1
(-1.8)
P 		160
C 378.1
(2.1)
P 		305.9
(0.3)
P 		414.5
(3)
P 		171.6
(-3)
P 		243
avr 384.7
(3) 		251.3
(-1.3) 		288.9
(-0.1) 		196.8
(-3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 461
1 2 3 4 5 6 range
A 269.7
(-2.3)
P 		403
(2.1)
P 		246.7
(-3)
P 		364.5
(0.8)
P 		432
(3)
P 		365.8
(0.9)
P 		185
B 508.6
(1.5)
P 		321.6
(-2.5)
P 		309.1
(-2.8)
P 		300.3
(-3)
P 		575.9
(3)
P 		489.9
(1.1)
P 		276
C 664.2
(3)
P 		297.4
(-1.8)
P 		317.8
(-1.5)
P 		203.2
(-3)
P 		450.1
(0.2)
P 		486.3
(0.7)
P 		461
avr 480.8
(2.8) 		340.7
(-1.4) 		291.2
(-2.9) 		289.3
(-3) 		486
(3) 		447.3
(1.8) 		197
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180364_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.158
Sequence Type Exemplar sequence
Representative Public ID F23C8.6 NCBI
Target Description F23C8.6 /REP_DB=WormBase Gene ID /WP=CE20715 /TR=Q9TXI3 /GB=AAD03134.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058573(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058573 NCBI Caenorhabditis elegans F23C8.6 (F23C8.6) mRNA, complete cds. 11/11 None
GENEFINDER00000018152 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2418598:2421698:-1 11/11 None
SNAP00000018134 ENSEMBL cdna:SNAP chromosome:CEL140:I:2420963:2421677:-1 10/11 None
F23C8.6 ENSEMBL cdna:known chromosome:CEL140:I:2420832:2421736:-1 gene:F23C8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2420962-2421698(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23C8.6
Entrez Gene 171801 Entrez gene
SwissProt Q9TXI3 EMBL-EBI
WormBase CE20715 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262367_AT SNF7 family protein at
DROSOPHILA_2:1630958_AT dm
DROSGENOME1:153010_AT dm
CHICKEN:GGAAFFX.12066.1.S1_AT similar to RIKEN cDNA 2810405I11 gga
CHICKEN:GGAAFFX.12066.1.S1_S_AT similar to RIKEN cDNA 2810405I11 gga
MOUSE430A_2:1419690_AT RIKEN cDNA 2610002M06 gene mm
MOUSE430_2:1419690_AT RIKEN cDNA 2610002M06 gene mm
MOE430A:1419690_AT RIKEN cDNA 2610002M06 gene mm
MG-U74BV2:105317_AT RIKEN cDNA 2610002M06 gene mm
MG-U74CV2:169785_AT RIKEN cDNA 2610002M06 gene mm
RG-U34B:RC_AA955640_AT similar to RIKEN cDNA 2610002M06 rn
RAE230B:1382436_AT similar to RIKEN cDNA 2610002M06 rn
RAT230_2:1382436_AT similar to RIKEN cDNA 2610002M06 rn
Protein Similarities
Method ID Description E-Value
blast AAD03129 Hypothetical protein F23C8.5 [Caenorhabditis elegans] ref|NP_490973.2| F23C8.5 [Caenorhabditis elegans] 1.0E-120
blast CAE60382 Hypothetical protein CBG03983 [Caenorhabditis briggsae] 1.0E-113
blast AAD03134 Hypothetical protein F23C8.6 [Caenorhabditis elegans] ref|NP_490974.1| F23C8.6 [Caenorhabditis elegans] 2.0E-99
blast CAE60383 Hypothetical protein CBG03984 [Caenorhabditis briggsae] 5.0E-99
blast AAD03134 Hypothetical protein F23C8.6 [Caenorhabditis elegans] ref|NP_490974.1| F23C8.6 [Caenorhabditis elegans] 3.0E-98
blast AAD03134 Hypothetical protein F23C8.6 [Caenorhabditis elegans] ref|NP_490974.1| F23C8.6 [Caenorhabditis elegans] 1.0E-95
blast CAE60383 Hypothetical protein CBG03984 [Caenorhabditis briggsae] 4.0E-95
blast XP_794815 PREDICTED: similar to chromatin modifying protein 1B [Strongylocentrotus purpuratus] 3.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR005024 EMBL-EBI Snf7 2.0E-52
Pfam IPR000049 EMBL-EBI Electron transfer flavoprotein beta-subunit 1.4E-68
Pfam IPR000049 EMBL-EBI Electron transfer flavoprotein beta-subunit 1.2E-18
Pfam IPR005024 EMBL-EBI Snf7 2.0E-52
Sequence
Target Sequence 
>C. ELEGANS:180364_S_AT
ccggagaaagcagtatggccttggaaaaacacttatttgatcttaaattcgcagcgaaac
agttggaaaagaatgctcaacgatgcgagaaggatgaaaaggtcgagaaagacaagctga
cggcagctattaagaaaggaaacaaagaagtcgcacaggttcatgctgaaaatgcgatca
ggaagaagaatgaagcagtgaactacattaaaatggccgccagaatcgacgcagtggccg
cccgagttcaaaccgccgccacacaaaaacgagtaaccgccagcatgagcggcgtagtga
aagccatggaaagcgccatgaagagcatgaatctcgagaaagttcaacagttgatggata
gattcgaaagagatttcgaagatctcgacgtgaccacaaagacgatggaaaagacgatgg
acggaacgacagtgttgaatgctccgaagtcacaggtggatgctctgattgcagaggccg
ccgacaaggcaggcatcgagctcaaccaggagcttccgtcaaacgtgccaactgctctgc
cgaccgggacgcaagctgtttcagaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGGAGAAAGCAGTATGGCCTTGGA 463 263 20 Antisense
GAAGTCGCACAGGTTCATGCTGAAA 105 337 166 Antisense
TGGCCGCCAGAATCGACGCAGTGGC 260 545 233 Antisense
GCCGCCACACAAAAACGAGTAACCG 641 285 274 Antisense
GTAACCGCCAGCATGAGCGGCGTAG 194 463 292 Antisense
CGAAGATCTCGACGTGACCACAAAG 621 253 396 Antisense
GACGATGGACGGAACGACAGTGTTG 396 377 432 Antisense
GTGTTGAATGCTCCGAAGTCACAGG 260 485 451 Antisense
GTCACAGGTGGATGCTCTGATTGCA 16 465 468 Antisense
TGATTGCAGAGGCCGCCGACAAGGC 441 563 485 Antisense
CCGGGACGCAAGCTGTTTCAGAAGA 307 265 563 Antisense
Sequence Source Affymetrix Proprietary Database