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[180363_at]

Description W04C9.5 /REP_DB=WormBase Gene ID /WP=CE18336 /TR=Q9TZE3 /GB=AAC68728.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 12      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 53.6
(-3)
P 		66.6
(-2)
A 		55.9
(-2.8)
P 		133.8
(3)
P 		80
B 72.9
(0.3)
P 		58.8
(-0.3)
A 		3.8
(-3)
A 		128.1
(3)
P 		124
C 98.5
(1.4)
P 		30.9
(-2.5)
A 		23
(-3)
A 		125.9
(3)
P 		103
avr 75
(-0.2) 		52.1
(-1.6) 		27.6
(-3) 		129.3
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 28.3
(-1)
A 		11.6
(-3)
A 		61.5
(3)
P 		35.3
(-0.2)
P 		48.1
(1.4)
A 		37
(0.1)
P 		50
B 39.6
(1.1)
P 		26.4
(-3)
A 		29
(-2.2)
A 		45.9
(3)
A 		43.6
(2.3)
P 		38.8
(0.8)
A 		20
C 55.5
(1.5)
P 		65.9
(3)
A 		24.6
(-3)
A 		43.7
(-0.2)
A 		43
(-0.3)
M 		49.8
(0.7)
A 		41
avr 41.1
(0.8) 		34.6
(-3) 		38.4
(-0.8) 		41.6
(1.1) 		44.9
(3) 		41.9
(1.3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 19.5
(2.9)
P 		14.5
(-3)
A 		14.6
(-2.9)
P 		19.6
(3)
P 		5
B 23.3
(2.1)
P 		14.5
(0.1)
A 		0.9
(-3)
A 		27.3
(3)
P 		26
C 32.6
(3)
P 		8.9
(-2.8)
A 		8
(-3)
A 		21.2
(0.2)
P 		25
avr 25.1
(3) 		12.6
(-1.3) 		7.8
(-3) 		22.7
(2.2) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 5.2
(-2.4)
A 		4.1
(-3)
A 		13.4
(2.4)
P 		9
(-0.2)
P 		14.5
(3)
A 		9
(-0.2)
P 		10
B 13.8
(0.8)
P 		8.8
(-2)
A 		7
(-3)
A 		12.2
(-0.1)
A 		17.7
(3)
P 		14.5
(1.2)
A 		11
C 20.6
(3)
P 		20.1
(2.8)
A 		6.3
(-3)
A 		8.8
(-2)
A 		13.9
(0.2)
M 		16.7
(1.4)
A 		14
avr 13.2
(1) 		11
(-1.1) 		8.9
(-3) 		10
(-2) 		15.4
(3) 		13.4
(1.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180363_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2596
Sequence Type Exemplar sequence
Representative Public ID W04C9.5 NCBI
Target Description W04C9.5 /REP_DB=WormBase Gene ID /WP=CE18336 /TR=Q9TZE3 /GB=AAC68728.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058334(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058334 NCBI Caenorhabditis elegans W04C9.5 (W04C9.5) mRNA, complete cds. 10/11 None
SNAP00000019985 ENSEMBL cdna:SNAP chromosome:CEL140:I:462660:467134:-1 10/11 None
GENEFINDER00000019991 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:462660:467134:-1 10/11 None
W04C9.5 ENSEMBL cdna:known chromosome:CEL140:I:462660:465198:-1 gene:W04C9.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:462659-465198(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04C9.5
Entrez Gene 189184 Entrez gene
SwissProt Q9TZE3 EMBL-EBI
WormBase CE34389 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68728 Hypothetical protein W04C9.5 [Caenorhabditis elegans] ref|NP_490735.2| W04C9.5 [Caenorhabditis elegans] 1.0E-152
blast AAC68728 Hypothetical protein W04C9.5 [Caenorhabditis elegans] ref|NP_490735.2| W04C9.5 [Caenorhabditis elegans] 1.0E-151
blast CAE74351 Hypothetical protein CBG22069 [Caenorhabditis briggsae] 1.0E-96
blast CAE74351 Hypothetical protein CBG22069 [Caenorhabditis briggsae] 2.0E-96
blast CAE74351 Hypothetical protein CBG22069 [Caenorhabditis briggsae] 2.0E-83
blast AAC68728 Hypothetical protein W04C9.5 [Caenorhabditis elegans] ref|NP_490735.2| W04C9.5 [Caenorhabditis elegans] 5.0E-73
blast AAM29676 Hypothetical protein F20D6.8 [Caenorhabditis elegans] ref|NP_505105.2| F20D6.8 [Caenorhabditis elegans] 6.0E-59
blast AAM29676 Hypothetical protein F20D6.8 [Caenorhabditis elegans] ref|NP_505105.2| F20D6.8 [Caenorhabditis elegans] 3.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 9.9E-13
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 9.9E-13
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 9.9E-13
Sequence
Target Sequence 
>C. ELEGANS:180363_AT
tcattcgtgtgtgccacagacctgctcagtcggcttttgaatcgaaaaattgctcgcgga
gccaatattatactgattggcaataaaatcgatttgaaacggaatacggaaaattttgtg
aaatttgagcattatcgatttttcataagtttatcaatggagcgcgtttgcaaagtaaag
tattttgaatttttgttcgtcaaatgtgatgcattgcgtataaaatcgtcaaaggaaaat
tcttcgatgcaccatgtttttcaaccaaaaaaaacgatgcaacgcgtgccgcgtcgcggc
tccacgtggaacttcaaattatcgatttttaaattgatttttccagaaggagcctgcctg
gccaaagtacacaagtgcaatttcgtcgaagtttccgcgcagtactcgatgaacatttct
gagctctggacaataattctaaagcagctacaggctccgaaagcggagctcgaggagccc
aatggatggatgcatcgaatcgtgacacgtggcaaacagttggctcactca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTCGTGTGTGCCACAGACCTGC 426 619 484 Antisense
GACCTGCTCAGTCGGCTTTTGAATC 382 381 502 Antisense
GCTCGCGGAGCCAATATTATACTGA 518 299 535 Antisense
TTCCAGAAGGAGCCTGCCTGGCCAA 79 699 824 Antisense
GCCTGGCCAAAGTACACAAGTGCAA 367 283 839 Antisense
GCAATTTCGTCGAAGTTTCCGCGCA 288 323 860 Antisense
TTTCCGCGCAGTACTCGATGAACAT 348 669 875 Antisense
GATGAACATTTCTGAGCTCTGGACA 208 413 891 Antisense
AAAGCAGCTACAGGCTCCGAAAGCG 587 123 924 Antisense
GATGCATCGAATCGTGACACGTGGC 268 413 972 Antisense
ACGTGGCAAACAGTTGGCTCACTCA 203 95 990 Antisense
Sequence Source Affymetrix Proprietary Database