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[180362_at]

Description K06A9.3 /REP_DB=WormBase Gene ID /WP=CE07336 /TR=P91363 /GB=AAC70888.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 44      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 101.1
(-0.1)
A 		168.8
(3)
A 		35.7
(-3)
A 		36.1
(-3)
A 		133
B 177.2
(1.6)
A 		210.5
(3)
A 		112.3
(-1)
A 		64.6
(-3)
A 		146
C 162.1
(3)
A 		147.7
(2)
A 		133.7
(1.1)
A 		71.4
(-3)
A 		91
avr 146.8
(1.5) 		175.7
(3) 		93.9
(-1.1) 		57.4
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 251.9
(3)
A 		218.5
(2.1)
P 		184.8
(1.1)
A 		131.5
(-0.4)
A 		36.6
(-3)
A 		85.9
(-1.6)
A 		215
B 252.2
(1.9)
M 		244.1
(1.7)
A 		291.5
(3)
A 		147.3
(-0.9)
P 		185.5
(0.1)
A 		70
(-3)
A 		222
C 268.7
(2.1)
P 		191.1
(-0.1)
P 		220.5
(0.8)
P 		300
(3)
P 		91.9
(-2.9)
A 		87.3
(-3)
A 		213
avr 257.6
(3) 		217.9
(1.7) 		232.3
(2.1) 		192.9
(0.8) 		104.7
(-2.2) 		81.1
(-3) 		177
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 36.8
(3)
A 		36.6
(3)
A 		9.3
(-2.2)
A 		5.3
(-3)
A 		32
B 56.5
(3)
A 		52
(2.4)
A 		26
(-1.3)
A 		13.8
(-3)
A 		43
C 53.6
(3)
A 		42.5
(1.4)
A 		46.6
(2)
A 		12
(-3)
A 		42
avr 49
(3) 		43.7
(2.2) 		27.3
(-0.4) 		10.4
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 46.4
(0.2)
A 		77.7
(3)
P 		40.3
(-0.4)
A 		33.4
(-1)
A 		11
(-3)
A 		20.9
(-2.1)
A 		67
B 87.8
(3)
M 		81.3
(2.4)
A 		70.8
(1.3)
A 		39
(-1.7)
P 		75.4
(1.8)
A 		26.1
(-3)
A 		62
C 99.6
(3)
P 		58.3
(-0.5)
P 		56.1
(-0.7)
P 		60.3
(-0.3)
P 		29.7
(-3)
A 		29.2
(-3)
A 		70
avr 77.9
(3) 		72.4
(2.4) 		55.7
(0.5) 		44.2
(-0.9) 		38.7
(-1.5) 		25.4
(-3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180362_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18339
Sequence Type Exemplar sequence
Representative Public ID K06A9.3 NCBI
Target Description K06A9.3 /REP_DB=WormBase Gene ID /WP=CE07336 /TR=P91363 /GB=AAC70888.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075889(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075889 NCBI Caenorhabditis elegans K06A9.3 (K06A9.3) mRNA, complete cds. 11/11 None
K06A9.3 ENSEMBL cdna:known chromosome:CEL140:X:1534421:1534939:-1 gene:K06A9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1534420-1534939(-) 98.9 100.0
Public Domain and Genome References
Gene Title
Ensembl K06A9.3
Entrez Gene 187050 Entrez gene
SwissProt P91363 EMBL-EBI
WormBase CE07336 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC70888 Hypothetical protein K06A9.3 [Caenorhabditis elegans] ref|NP_508290.1| K06A9.3 [Caenorhabditis elegans] 9.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 1.5E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508290.1 1 76-98
K06A9.3 1 76-98
Sequence
Target Sequence 
>C. ELEGANS:180362_AT
gcatgattgattctatgtgcccctccgaatgtcacagtagagggtactgctttagaattg
agggggagccgcgatgtttttgccaagctgggtttgaaggcgacgtttgccaatttattg
agagcacagttgccaccatcgaagataccaaacacgggtggggtgtaatggatactctgc
tactaatttgcatttgtctggtggtcatcggtttctactgtattttcatgggatatcgca
gccgtcggaaggatccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATGATTGATTCTATGTGCCCCTC 232 311 80 Antisense
GCCCCTCCGAATGTCACAGTAGAGG 53 287 98 Antisense
GAATTGAGGGGGAGCCGCGATGTTT 409 321 134 Antisense
CCGCGATGTTTTTGCCAAGCTGGGT 665 261 148 Antisense
AGCTGGGTTTGAAGGCGACGTTTGC 52 79 165 Antisense
TTGAGAGCACAGTTGCCACCATCGA 670 703 197 Antisense
GGGGTGTAATGGATACTCTGCTACT 703 495 239 Antisense
TTGCATTTGTCTGGTGGTCATCGGT 298 703 267 Antisense
GGTCATCGGTTTCTACTGTATTTTC 479 503 282 Antisense
ATTTTCATGGGATATCGCAGCCGTC 127 15 301 Antisense
ATCGCAGCCGTCGGAAGGATCCAGA 239 37 314 Antisense
Sequence Source Affymetrix Proprietary Database