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[180361_at]

Description F42G2.2 /REP_DB=WormBase Gene ID /WP=CE10308 /TR=O17101 /GB=AAB70354.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 83      4grp_highest_8_8 > 30      4grp_high_8_8 > 07      6grp_highest_nonorm > 72      6grp_total > 74      4grp_total > 04      6grp_high1_sub > 04      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 468.3
(1.6)
P 		393.8
(-3)
P 		490.9
(3)
P 		476.9
(2.1)
P 		97
B 398.3
(-0.6)
P 		381.9
(-1)
P 		282.7
(-3)
P 		577.8
(3)
P 		295
C 399.3
(-1.9)
P 		359
(-3)
P 		439.8
(-0.8)
P 		582
(3)
P 		223
avr 422
(-1.4) 		378.2
(-3) 		404.5
(-2.1) 		545.6
(3) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 412
1 2 3 4 5 6 range
A 234.3
(-3)
P 		348.6
(-1.3)
P 		491.3
(0.9)
P 		628.3
(3)
P 		497
(1)
P 		532.8
(1.5)
P 		394
B 339.7
(-3)
P 		362.6
(-2.3)
P 		541.8
(3)
P 		475.8
(1)
P 		526.6
(2.5)
P 		373.9
(-2)
P 		202
C 216.2
(-3)
P 		418.6
(0.3)
P 		444.3
(0.7)
P 		582
(3)
P 		435.7
(0.6)
P 		544.4
(2.4)
P 		366
avr 263.4
(-3) 		376.6
(-0.7) 		492.5
(1.6) 		562
(3) 		486.4
(1.5) 		483.7
(1.4) 		299
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 170.5
(3)
P 		85.5
(-2.1)
P 		128.3
(0.5)
P 		69.8
(-3)
P 		101
B 127
(3)
P 		94.3
(-0.2)
P 		65.5
(-3)
P 		123.1
(2.6)
P 		62
C 132.2
(0.7)
P 		103.2
(-2.4)
P 		153.3
(3)
P 		98.1
(-3)
P 		55
avr 143.2
(3) 		94.3
(-3) 		115.7
(-0.4) 		97
(-2.7) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 43.2
(-3)
P 		124
(1.2)
P 		107
(0.3)
P 		159.4
(3)
P 		150
(2.5)
P 		129.7
(1.5)
P 		116
B 118.2
(-3)
P 		120.7
(-2.8)
P 		131.6
(-2.2)
P 		126
(-2.5)
P 		214
(3)
P 		139.4
(-1.7)
P 		96
C 80.1
(-3)
P 		127.7
(-0.2)
P 		113.1
(-1.1)
P 		117
(-0.8)
P 		141
(0.6)
P 		182.2
(3)
P 		102
avr 80.5
(-3) 		124.1
(-0) 		117.2
(-0.5) 		134.1
(0.7) 		168.3
(3) 		150.4
(1.8) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180361_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4269
Sequence Type Exemplar sequence
Representative Public ID F42G2.2 NCBI
Target Description F42G2.2 /REP_DB=WormBase Gene ID /WP=CE10308 /TR=O17101 /GB=AAB70354.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061872(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061872 NCBI Caenorhabditis elegans F42G2.2 (F42G2.2) mRNA, complete cds. 11/11 None
SNAP00000009892 ENSEMBL cdna:SNAP chromosome:CEL140:II:2423535:2429450:1 11/11 None
GENEFINDER00000009898 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2423189:2425334:1 11/11 None
F42G2.2 ENSEMBL cdna:known chromosome:CEL140:II:2422208:2425344:1 gene:F42G2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2422212-2425333(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42G2.2
Entrez Gene 259422 Entrez gene
SwissProt O17101 EMBL-EBI
WormBase CE10308 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70354 Hypothetical protein F42G2.2 [Caenorhabditis elegans] ref|NP_494273.1| F42G2.2 [Caenorhabditis elegans] 0.0
blast AAT48620 Hypothetical protein F42G2.4a [Caenorhabditis elegans] ref|NP_494270.3| F42G2.4a [Caenorhabditis elegans] 0.0
blast T32285 hypothetical protein F42G2.4 - Caenorhabditis elegans 0.0
blast AAT48620 Hypothetical protein F42G2.4a [Caenorhabditis elegans] ref|NP_494270.3| F42G2.4a [Caenorhabditis elegans] 1.0E-148
blast T32285 hypothetical protein F42G2.4 - Caenorhabditis elegans 1.0E-147
blast AAT48620 Hypothetical protein F42G2.4a [Caenorhabditis elegans] ref|NP_494270.3| F42G2.4a [Caenorhabditis elegans] 1.0E-139
blast T32285 hypothetical protein F42G2.4 - Caenorhabditis elegans 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.6E-30
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-4
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.0E-14
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.6E-30
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-4
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.3E-32
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.6E-30
Sequence
Target Sequence 
>C. ELEGANS:180361_AT
gaagaattcgttttgccgctggatcgattgctttctgttgaaaaatttaaaacgatgtta
acaaatgcacaaatcgtcggccaactgctcaaatacttggatccagtttcgctgagaaaa
attgaatttggatctaaatacgtgaacatggaaacatggaaaccatggaaacacattaag
cttgataatacagttaatttatgcaaaatggaacattggaaaaatgcaaaggaattgact
atccacaatacagtcgtgaaatgtaatcttgaagtcttgattcatttttcaaaagttgac
attatattggactcgattttattgcaggatgttgtatacttgaaagatgcgcttctccta
tctccaacattccgccaattcaaagcccagtttgtgaacagtgatatcaatgagaccata
tttgatgatgccttttttagatatccgtttcgcagaattgaggacccttcgtcagggcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAATTCGTTTTGCCGCTGGATC 150 341 1102 Antisense
AATTCGTTTTGCCGCTGGATCGATT 468 177 1106 Antisense
AAATGCACAAATCGTCGGCCAACTG 634 117 1164 Antisense
AATACTTGGATCCAGTTTCGCTGAG 120 173 1193 Antisense
GTCGTGAAATGTAATCTTGAAGTCT 427 473 1354 Antisense
ATTATATTGGACTCGATTTTATTGC 206 5 1402 Antisense
TTGAAAGATGCGCTTCTCCTATCTC 405 705 1441 Antisense
GAGACCATATTTGATGATGCCTTTT 265 395 1513 Antisense
ATGCCTTTTTTAGATATCCGTTTCG 553 39 1529 Antisense
CCGTTTCGCAGAATTGAGGACCCTT 444 263 1546 Antisense
AATTGAGGACCCTTCGTCAGGGCTA 323 179 1557 Antisense
Sequence Source Affymetrix Proprietary Database