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[180360_at]

Description C52E2.5 /REP_DB=WormBase Gene ID /WP=CE25829 /TR=Q9N4L1 /GB=AAF35424.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 23      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 93.5
(3)
P 		56.4
(-2)
A 		48.9
(-3)
A 		70
(-0.2)
M 		45
B 91.2
(2)
P 		47.3
(-3)
A 		47.5
(-3)
A 		100.4
(3)
M 		53
C 113.9
(3)
P 		46.2
(-2.7)
P 		42.5
(-3)
A 		81.8
(0.3)
M 		71
avr 99.5
(3) 		50
(-2.6) 		46.3
(-3) 		84.1
(1.3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 60.8
(1.9)
M 		44.6
(-1.1)
A 		36.1
(-2.7)
A 		66.4
(3)
P 		34.7
(-3)
A 		47.2
(-0.6)
A 		32
B 27.4
(-1.7)
P 		30.3
(-1.3)
A 		18.2
(-3)
A 		59.8
(3)
P 		36
(-0.4)
P 		22.9
(-2.3)
A 		42
C 25.1
(-2.6)
P 		34.1
(-1.7)
M 		45.9
(-0.6)
A 		84
(3)
P 		20.8
(-3)
A 		28.8
(-2.2)
A 		63
avr 37.8
(-1.9) 		36.3
(-2.1) 		33.4
(-2.6) 		70.1
(3) 		30.5
(-3) 		33
(-2.6) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 34
(3)
P 		12.2
(-2.5)
A 		12.8
(-2.4)
A 		10.3
(-3)
M 		24
B 29.1
(3)
P 		11.7
(-2.8)
A 		11
(-3)
A 		21.4
(0.4)
M 		18
C 37.7
(3)
P 		13.3
(-3)
P 		14.8
(-2.6)
A 		13.8
(-2.9)
M 		24
avr 33.6
(3) 		12.4
(-3) 		12.9
(-2.9) 		15.2
(-2.2) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 11.2
(-0.8)
M 		15.9
(2.4)
A 		7.9
(-3)
A 		16.8
(3)
P 		10.5
(-1.2)
A 		11.5
(-0.6)
A 		9
B 9.5
(-0.3)
P 		10.1
(-0)
A 		4.4
(-3)
A 		15.8
(3)
P 		14.6
(2.4)
P 		8.5
(-0.8)
A 		11
C 9.3
(-1.5)
P 		10.4
(-0.8)
M 		11.7
(-0.1)
A 		16.9
(3)
P 		6.7
(-3)
A 		9.7
(-1.2)
A 		10
avr 10
(-1.6) 		12.1
(-0.1) 		8
(-3) 		16.5
(3) 		10.6
(-1.2) 		9.9
(-1.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180360_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4149
Sequence Type Exemplar sequence
Representative Public ID C52E2.5 NCBI
Target Description C52E2.5 /REP_DB=WormBase Gene ID /WP=CE25829 /TR=Q9N4L1 /GB=AAF35424.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061690(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061690 NCBI Caenorhabditis elegans C52E2.5 (C52E2.5) mRNA, complete cds. 11/11 None
SNAP00000007507 ENSEMBL cdna:SNAP chromosome:CEL140:II:1840483:1841875:-1 11/11 None
GENEFINDER00000007523 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1840483:1842939:-1 11/11 None
C52E2.5 ENSEMBL cdna:known chromosome:CEL140:II:1840978:1842945:-1 gene:C52E2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1840976-1842938(-) 98.82 100.0
Public Domain and Genome References
Gene Title
Ensembl C52E2.5
Entrez Gene 259418 Entrez gene
SwissProt Q9N4L1 EMBL-EBI
WormBase CE25829 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF35424 Hypothetical protein C52E2.5 [Caenorhabditis elegans] ref|NP_494091.1| C52E2.5 [Caenorhabditis elegans] 0.0
blast AAB71074 Hypothetical protein ZK250.5a [Caenorhabditis elegans] ref|NP_001022518.1| ZK250.5a [Caenorhabditis elegans] 1.0E-137
blast AAY43980 Hypothetical protein ZK250.5b [Caenorhabditis elegans] ref|NP_001022519.1| ZK250.5b [Caenorhabditis elegans] 1.0E-137
blast AAF35424 Hypothetical protein C52E2.5 [Caenorhabditis elegans] ref|NP_494091.1| C52E2.5 [Caenorhabditis elegans] 1.0E-135
blast AAC26319 Hypothetical protein T08E11.8 [Caenorhabditis elegans] ref|NP_494089.1| T08E11.8 [Caenorhabditis elegans] 1.0E-107
blast AAB71074 Hypothetical protein ZK250.5a [Caenorhabditis elegans] ref|NP_001022518.1| ZK250.5a [Caenorhabditis elegans] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.2E-28
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.1E-5
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.2E-28
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.0E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.2E-33
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.4E-20
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.0E-6
Sequence
Target Sequence 
>C. ELEGANS:180360_AT
atatcctggtacacgtgtagccacttcctttttgaaaattgatcacaaagcggacattaa
caatttgtcagacgacttggttcaacttttgaagaatcaaaagactgctttgaaagaact
ttgtgctactctaaagccattgaacgaacgtaattattataatactacgaagatggaaga
ttggcagttgagtgtagatcagtttattggaatgtttcaagcaactttctcctcacgtga
caacatgcttgcagtagagaaattaaatttgacaacaacatgtttaacaagaaccacgca
aattcttgaaaacttggatcctgttgcaataaaaacaattgcacttcgaacaatgtcttt
tttggaagcctgtttgcaatcagtagatgtctctcgttccgtcttaccatactcaaattc
aaccaaattaaacaagttttctgtgccagatgtgcagtcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCCTGGTACACGTGTAGCCACT 270 19 1161 Antisense
GTGTAGCCACTTCCTTTTTGAAAAT 370 483 1175 Antisense
GTCAGACGACTTGGTTCAACTTTTG 546 465 1227 Antisense
GAACTTTGTGCTACTCTAAAGCCAT 330 349 1276 Antisense
GAATGTTTCAAGCAACTTTCTCCTC 4 333 1370 Antisense
CTCCTCACGTGACAACATGCTTGCA 560 235 1389 Antisense
TGCACTTCGAACAATGTCTTTTTTG 7 577 1500 Antisense
GTCTTTTTTGGAAGCCTGTTTGCAA 418 467 1515 Antisense
AATCAGTAGATGTCTCTCGTTCCGT 376 171 1538 Antisense
TCTTACCATACTCAAATTCAACCAA 441 611 1562 Antisense
TTTCTGTGCCAGATGTGCAGTCAAT 162 671 1598 Antisense
Sequence Source Affymetrix Proprietary Database