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[180359_at]

Description F41C3.6 /REP_DB=WormBase Gene ID /WP=CE02734 /TR=Q20262 /GB=AAC46813.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 02      6grp_total > 24      4grp_total > 37      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 53.9
(3)
P 		52
(2.6)
P 		23.1
(-3)
A 		43.7
(1)
A 		31
B 56.7
(1.1)
P 		82.9
(3)
P 		22.4
(-1.5)
P 		2
(-3)
A 		81
C 93.5
(3)
P 		30.3
(-3)
P 		30.6
(-3)
A 		68.9
(0.7)
A 		63
avr 68
(3) 		55.1
(1.2) 		25.4
(-3) 		38.2
(-1.2) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 48.2
(2.8)
A 		45.8
(1.8)
A 		48.8
(3)
P 		34
(-3)
A 		41.1
(-0.1)
P 		40.2
(-0.5)
A 		15
B 76
(3)
P 		32.9
(-2)
P 		32.7
(-2)
M 		32.7
(-2)
P 		30.2
(-2.3)
P 		24
(-3)
P 		52
C 29.4
(-2.1)
P 		50.8
(3)
P 		42.7
(1.1)
P 		45.2
(1.7)
A 		25.7
(-3)
P 		27.1
(-2.7)
P 		25
avr 51.2
(3) 		43.2
(0.7) 		41.4
(0.2) 		37.3
(-1) 		32.3
(-2.5) 		30.4
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 19.6
(3)
P 		11.3
(-0.7)
P 		6
(-3)
A 		6.4
(-2.8)
A 		14
B 18.1
(2.3)
P 		20.5
(3)
P 		5.2
(-1.6)
P 		0.4
(-3)
A 		20
C 30.9
(3)
P 		8.7
(-3)
P 		10.7
(-2.5)
A 		11.6
(-2.2)
A 		22
avr 22.9
(3) 		13.5
(-0.4) 		7.3
(-2.6) 		6.1
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 8.9
(-2.8)
A 		16.3
(3)
A 		10.6
(-1.4)
P 		8.6
(-3)
A 		12.4
(-0)
P 		9.8
(-2.1)
A 		8
B 26.5
(3)
P 		11
(-2)
P 		8
(-3)
M 		8.7
(-2.8)
P 		12.3
(-1.6)
P 		9
(-2.7)
P 		19
C 10.9
(-0.8)
P 		15.5
(3)
P 		10.9
(-0.8)
P 		9.1
(-2.3)
A 		8.3
(-3)
P 		9.1
(-2.3)
P 		7
avr 15.4
(3) 		14.3
(2) 		9.8
(-2.1) 		8.8
(-3) 		11
(-1) 		9.3
(-2.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180359_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4228
Sequence Type Exemplar sequence
Representative Public ID F41C3.6 NCBI
Target Description F41C3.6 /REP_DB=WormBase Gene ID /WP=CE02734 /TR=Q20262 /GB=AAC46813.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062444(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062444 NCBI Caenorhabditis elegans F41C3.6 (F41C3.6) mRNA, complete cds. 11/11 None
GENEFINDER00000035634 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4735172:4736671:1 11/11 None
F41C3.6 ENSEMBL cdna:known chromosome:CEL140:II:4735100:4736837:1 gene:F41C3.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035619 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4735098-4736648(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41C3.6
Entrez Gene 173817 Entrez gene
SwissProt Q20262 EMBL-EBI
WormBase CE29797 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46813 Hypothetical protein F41C3.6 [Caenorhabditis elegans] ref|NP_494845.2| F41C3.6 [Caenorhabditis elegans] 1.0E-127
blast AAC46813 Hypothetical protein F41C3.6 [Caenorhabditis elegans] ref|NP_494845.2| F41C3.6 [Caenorhabditis elegans] 1.0E-119
Sequence
Target Sequence 
>C. ELEGANS:180359_AT
aaagttcgcctatattcgagccataattttgtgatgctctactcctcatcgaaaatattg
atgatggaaattgatgatttggagaaaatgataacctatgatgacgtggcagatgtcgtc
tcattacttgttttaaatggaagtccgtgttatatgaatggatccggaaaagttactatt
ttggagaatcaggaaaagttggtttttaatagggaaacagagatatattgtaaaaatact
atcacaactggagatattggaaaatttggagaagatcggctcatgatttttgataagttt
tctcaaacttgttttgtctgggaaaaagataaaccaaaaaatccatctcatcaactttgc
tttggatcgtctgaatatacagtagacgtggcttgcgacgaggagaatttgtactcctta
acttctgccggcaagaaaatatcgagatcaactattcacaacatacctgaaccattgcac
aaaactacttttaacatattctcagaagtttgtgattctcaccaactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTTCGCCTATATTCGAGCCATA 246 123 154 Antisense
ATAATTTTGTGATGCTCTACTCCTC 8 27 176 Antisense
GGCAGATGTCGTCTCATTACTTGTT 50 535 261 Antisense
GAGAAGATCGGCTCATGATTTTTGA 550 391 422 Antisense
AAATCCATCTCATCAACTTTGCTTT 220 119 492 Antisense
AACTTTGCTTTGGATCGTCTGAATA 691 137 506 Antisense
GTAGACGTGGCTTGCGACGAGGAGA 677 455 535 Antisense
GAATTTGTACTCCTTAACTTCTGCC 184 325 558 Antisense
GATCAACTATTCACAACATACCTGA 531 421 599 Antisense
ACATACCTGAACCATTGCACAAAAC 582 105 614 Antisense
AGAAGTTTGTGATTCTCACCAACTC 375 75 657 Antisense
Sequence Source Affymetrix Proprietary Database