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[180357_at]

Description B0034.5 /REP_DB=WormBase Gene ID /WP=CE02413 /TR=Q10913 /GB=AAK31386.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 28      6grp_total > 17      4grp_total > 19      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 129.1
(-0.6)
P 		109.3
(-3)
P 		124.2
(-1.2)
A 		158.3
(3)
P 		49
B 88.5
(-3)
P 		144.6
(2.7)
A 		88.2
(-3)
A 		147.6
(3)
P 		59
C 147.1
(-0.7)
P 		156.6
(0.1)
A 		118.3
(-3)
A 		193.2
(3)
P 		75
avr 121.6
(-1.8) 		136.8
(-0.2) 		110.2
(-3) 		166.4
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 221.9
(3)
P 		127.1
(-1)
P 		128.6
(-1)
P 		130.2
(-0.9)
A 		137
(-0.6)
A 		81.2
(-3)
A 		141
B 225.5
(3)
P 		129
(-1.4)
P 		109.1
(-2.3)
P 		93.4
(-3)
P 		118.6
(-1.9)
P 		154.7
(-0.2)
P 		132
C 128.6
(0.4)
A 		164.8
(3)
P 		90.9
(-2.2)
A 		120.1
(-0.2)
A 		79.8
(-3)
A 		143.7
(1.5)
P 		85
avr 192
(3) 		140.3
(-0.8) 		109.5
(-3) 		114.6
(-2.6) 		111.8
(-2.8) 		126.5
(-1.8) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 47
(3)
P 		23.7
(-2.9)
P 		32.5
(-0.7)
A 		23.2
(-3)
P 		24
B 28.2
(0.1)
P 		35.7
(3)
A 		20.4
(-3)
A 		31.5
(1.4)
P 		15
C 48.7
(3)
P 		45
(1.6)
A 		41.2
(0.2)
A 		32.6
(-3)
P 		16
avr 41.3
(3) 		34.8
(-0.2) 		31.4
(-1.9) 		29.1
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 40.9
(2)
P 		45.2
(3)
P 		28
(-1.1)
P 		33
(0.1)
A 		41.3
(2.1)
A 		19.8
(-3)
A 		25
B 78.5
(3)
P 		43
(-1)
P 		26.5
(-2.8)
P 		24.7
(-3)
P 		48.2
(-0.4)
P 		57.7
(0.7)
P 		54
C 47.7
(2.4)
A 		50.3
(3)
P 		23.1
(-3)
A 		24.2
(-2.8)
A 		25.8
(-2.4)
A 		48.1
(2.5)
P 		27
avr 55.7
(3) 		46.2
(1.1) 		25.9
(-3) 		27.3
(-2.7) 		38.4
(-0.5) 		41.9
(0.2) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180357_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4225
Sequence Type Exemplar sequence
Representative Public ID B0034.5 NCBI
Target Description B0034.5 /REP_DB=WormBase Gene ID /WP=CE02413 /TR=Q10913 /GB=AAK31386.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062792(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062792 NCBI Caenorhabditis elegans B0034.5 (B0034.5) mRNA, complete cds. 11/11 None
SNAP00000014840 ENSEMBL cdna:SNAP chromosome:CEL140:II:5972816:5973655:-1 10/11 None
GENEFINDER00000014843 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5972816:5974997:-1 11/11 None
B0034.5 ENSEMBL cdna:known chromosome:CEL140:II:5972816:5977819:-1 gene:B0034.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5972812-5977816(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0034.5
Entrez Gene 181820 Entrez gene
SwissProt Q10913 EMBL-EBI
WormBase CE02413 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31386 Hypothetical protein B0034.5 [Caenorhabditis elegans] ref|NP_495193.1| B0034.5 [Caenorhabditis elegans] 0.0
blast AAK31386 Hypothetical protein B0034.5 [Caenorhabditis elegans] ref|NP_495193.1| B0034.5 [Caenorhabditis elegans] 1.0E-141
blast CAE59230 Hypothetical protein CBG02551 [Caenorhabditis briggsae] 1.0E-131
blast CAE59230 Hypothetical protein CBG02551 [Caenorhabditis briggsae] 1.0E-130
blast AAK31386 Hypothetical protein B0034.5 [Caenorhabditis elegans] ref|NP_495193.1| B0034.5 [Caenorhabditis elegans] 1.0E-95
blast CAE59230 Hypothetical protein CBG02551 [Caenorhabditis briggsae] 2.0E-89
blast CAE71522 Hypothetical protein CBG18457 [Caenorhabditis briggsae] 7.0E-24
blast CAE71522 Hypothetical protein CBG18457 [Caenorhabditis briggsae] 1.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495193.1 8 63-82,92-114,121-143,168-190,203-225,295-317,354-376,391-413
B0034.5 8 63-82,92-114,121-143,168-190,203-225,295-317,354-376,391-413
SNAP00000014840 3 42-64,101-123,138-160
GENEFINDER00000014843 5 37-59,72-94,164-186,223-245,260-282
Sequence
Target Sequence 
>C. ELEGANS:180357_AT
catgcctttcccttggagtactaacaaaaggtggaatgctcatagagcttgatgtgtttc
caaatgaagatccttcatgcaaaaatacagtaatggagtattatgtagatgtaacagata
ttacaaaatctgtttggtatggtacaatttacaagttttggattcgaaacattgccactg
tgtttcttccatttgcccttctcttattaataaatcttggaattgtcctggagcttcgat
ctcaaatgcaacacgcttttgggaatagatcaagaagaagattttcattgagaatgcaga
gtcggacaaacgtacgtcaggcgacagccacaatgctattcatttgtgtcatttatttga
tatcaaacgtagtgaatgtgttcatcaccgcttgggaattcattgatattgagtcattgc
aaacacggttcttggaagagtacatgttatccgctgatctttcttcagttctggtagtga
ctgcttgtgcacttcgactcccaatatatatgctgtgcaatccggagcttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGCCTTTCCCTTGGAGTACTAAC 290 209 737 Antisense
AAACATTGCCACTGTGTTTCTTCCA 101 129 903 Antisense
CCATTTGCCCTTCTCTTATTAATAA 556 269 925 Antisense
GGAATTGTCCTGGAGCTTCGATCTC 595 533 955 Antisense
GTACGTCAGGCGACAGCCACAATGC 247 459 1048 Antisense
GTGTTCATCACCGCTTGGGAATTCA 221 485 1114 Antisense
GAAGAGTACATGTTATCCGCTGATC 397 339 1171 Antisense
TCCGCTGATCTTTCTTCAGTTCTGG 128 597 1186 Antisense
GTTCTGGTAGTGACTGCTTGTGCAC 310 441 1204 Antisense
TGCACTTCGACTCCCAATATATATG 636 577 1224 Antisense
TATGCTGTGCAATCCGGAGCTTCGA 459 655 1245 Antisense
Sequence Source Affymetrix Proprietary Database