[Home] | [Total List]

[180356_at]

Description Y17D7C.2 /REP_DB=WormBase Gene ID /WP=CE16597 /TR=O62408 /GB=CAA16296.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 30      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 102.7
(3)
M 		99.6
(1.8)
A 		87.7
(-3)
A 		91.3
(-1.6)
A 		15
B 139.7
(3)
M 		91.3
(-0.3)
A 		84.9
(-0.8)
P 		52.9
(-3)
A 		87
C 123
(0)
A 		72.3
(-2.3)
A 		57
(-3)
A 		187.7
(3)
P 		131
avr 121.8
(3) 		87.7
(-1.5) 		76.5
(-3) 		110.6
(1.5) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 107.1
(3)
A 		79.5
(1.3)
A 		85.6
(1.7)
P 		72.1
(0.8)
P 		71.5
(0.8)
A 		10.7
(-3)
A 		96
B 80.8
(0.4)
A 		113.6
(3)
P 		77.8
(0.1)
A 		85.6
(0.8)
A 		38.5
(-3)
A 		48.7
(-2.2)
A 		75
C 94.1
(-0.2)
A 		141.3
(2.7)
P 		116.3
(1.2)
A 		146.5
(3)
P 		51.1
(-2.8)
A 		47.4
(-3)
A 		99
avr 94
(1.6) 		111.5
(3) 		93.2
(1.6) 		101.4
(2.2) 		53.7
(-1.6) 		35.6
(-3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 37.4
(3)
M 		21.6
(-1)
A 		22.9
(-0.6)
A 		13.4
(-3)
A 		24
B 44.5
(3)
M 		22.5
(-1)
A 		19.7
(-1.5)
P 		11.3
(-3)
A 		33
C 40.7
(3)
A 		20.8
(-2.7)
A 		19.9
(-3)
A 		31.7
(0.4)
P 		21
avr 40.9
(3) 		21.6
(-2.2) 		20.8
(-2.5) 		18.8
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 19.7
(1)
A 		28.3
(3)
A 		18.6
(0.7)
P 		18.3
(0.7)
P 		21.6
(1.4)
A 		2.6
(-3)
A 		26
B 28.1
(0.4)
A 		37.8
(3)
P 		18.9
(-2.1)
A 		22.7
(-1.1)
A 		15.6
(-3)
A 		18.1
(-2.3)
A 		22
C 34.9
(1.2)
A 		43.1
(3)
P 		29.6
(0)
A 		29.5
(-0)
P 		16.5
(-2.9)
A 		15.9
(-3)
A 		27
avr 27.6
(0.8) 		36.4
(3) 		22.4
(-0.5) 		23.5
(-0.2) 		17.9
(-1.6) 		12.2
(-3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180356_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14313
Sequence Type Exemplar sequence
Representative Public ID Y17D7C.2 NCBI
Target Description Y17D7C.2 /REP_DB=WormBase Gene ID /WP=CE16597 /TR=O62408 /GB=CAA16296.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075251(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075251 NCBI Caenorhabditis elegans Y17D7C.2 (Y17D7C.2) mRNA, complete cds. 11/11 None
GENEFINDER00000009594 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18718249:18722330:-1 11/11 None
Y17D7C.2 ENSEMBL cdna:known chromosome:CEL140:V:18719863:18722431:-1 gene:Y17D7C.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18720005-18722431(-) 88.56 88.84
Public Domain and Genome References
Gene Title
Ensembl Y17D7C.2
Entrez Gene 189452 Entrez gene
SwissProt O62408 EMBL-EBI
WormBase CE28972 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16296 Hypothetical protein Y17D7C.2 [Caenorhabditis elegans] ref|NP_507652.1| Y17D7C.2 [Caenorhabditis elegans] 1.0E-142
blast CAA16296 Hypothetical protein Y17D7C.2 [Caenorhabditis elegans] ref|NP_507652.1| Y17D7C.2 [Caenorhabditis elegans] 1.0E-118
blast CAB63406 Hypothetical protein Y69H2.9 [Caenorhabditis elegans] ref|NP_507650.1| Y69H2.9 [Caenorhabditis elegans] 2.0E-45
blast CAB63406 Hypothetical protein Y69H2.9 [Caenorhabditis elegans] ref|NP_507650.1| Y69H2.9 [Caenorhabditis elegans] 2.0E-39
blast CAD44097 Hypothetical protein C08B6.11 [Caenorhabditis elegans] ref|NP_741612.1| C08B6.11 [Caenorhabditis elegans] 4.0E-21
blast CAD44097 Hypothetical protein C08B6.11 [Caenorhabditis elegans] ref|NP_741612.1| C08B6.11 [Caenorhabditis elegans] 2.0E-18
Sequence
Target Sequence 
>C. ELEGANS:180356_AT
gtgaaagccaacggtatttcctcgtttcgtgtcaatgcacagcgcaactcgctgggagat
ttttttcgaaaggactgctacaaaaagctcaaatcaactctacgcaatgggacaagtaca
taccaacgcagttatggtacggcggagagaagattgaaccgtgctggaaaagagtcgacc
ggcacttggcattccagttttgcggggtccggggagcgtatcaaatcaacgaagcgtggg
ctgtgctcagagattgcattgaaagtccaaagcagcaaaagtgcgtgacgaaatttttgg
acaaactatacgagatttccaaaagcgatgaaaccaaattgacttgccataggtattatt
ggtacatgagccaccgaacacagattgaagttgttctagaagatgacaacattgtgtacg
tatataagaatagttcgctgaaatcagtagatcataaaaaccactcgtttttcttgatgg
atatttcaaaaaatgaaagtccaggggattgcagcgattcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAAAGCCAACGGTATTTCCTCGT 328 481 116 Antisense
GTTTCGTGTCAATGCACAGCGCAAC 313 451 139 Antisense
AGCGCAACTCGCTGGGAGATTTTTT 122 83 156 Antisense
AGCTCAAATCAACTCTACGCAATGG 36 81 201 Antisense
TGGAAAAGAGTCGACCGGCACTTGG 522 545 280 Antisense
GGCACTTGGCATTCCAGTTTTGCGG 661 533 296 Antisense
GGGTCCGGGGAGCGTATCAAATCAA 110 243 320 Antisense
GAAGCGTGGGCTGTGCTCAGAGATT 603 343 346 Antisense
GTACATGAGCCACCGAACACAGATT 89 459 477 Antisense
AAACCACTCGTTTTTCTTGATGGAT 493 125 573 Antisense
AAGTCCAGGGGATTGCAGCGATTCG 387 157 612 Antisense
Sequence Source Affymetrix Proprietary Database