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[180355_at]

Description C55C3.5 /REP_DB=WormBase Gene ID /WP=CE06992 /TR=Q18867 /GB=AAA96171.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 83      6grp_total > 95      4grp_total > 52      6grp_highest_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 355.9
(1.1)
P 		286.1
(-1.4)
P 		406
(3)
P 		243.6
(-3)
P 		162
B 352.4
(1.8)
P 		379.7
(3)
P 		245.8
(-3)
P 		276.2
(-1.6)
P 		134
C 354.6
(1.3)
P 		386.4
(3)
P 		375.9
(2.4)
P 		274.4
(-3)
P 		112
avr 354.3
(3) 		350.7
(2.8) 		342.6
(2.2) 		264.7
(-3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 448
(-1.4)
P 		391.7
(-3)
P 		421.2
(-2.2)
P 		463.4
(-1)
P 		569.7
(1.9)
P 		609.6
(3)
P 		218
B 478.8
(-0.4)
P 		430.8
(-1.6)
P 		376.4
(-3)
P 		476.2
(-0.5)
P 		612.9
(3)
P 		576.6
(2.1)
P 		237
C 392.2
(-1.9)
P 		349.9
(-3)
P 		406.9
(-1.5)
P 		453.3
(-0.2)
P 		575
(3)
P 		559.2
(2.6)
P 		225
avr 439.7
(-1.5) 		390.8
(-3) 		401.5
(-2.7) 		464.3
(-0.7) 		585.9
(3) 		581.8
(2.9) 		195
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 129.6
(3)
P 		62.1
(-1.3)
P 		106.1
(1.5)
P 		35.7
(-3)
P 		94
B 112.4
(3)
P 		93.8
(1)
P 		56.9
(-3)
P 		58.9
(-2.8)
P 		56
C 117.4
(2)
P 		111.1
(1.6)
P 		131
(3)
P 		46.3
(-3)
P 		85
avr 119.8
(3) 		89
(0.5) 		98
(1.2) 		47
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 82.6
(-3)
P 		139.3
(0.8)
P 		91.7
(-2.4)
P 		117.5
(-0.7)
P 		171.9
(3)
P 		148.4
(1.4)
P 		89
B 166.6
(-0.1)
P 		143.4
(-1)
P 		91.4
(-3)
P 		126.1
(-1.7)
P 		249
(3)
P 		215
(1.7)
P 		158
C 145.4
(0.4)
P 		106.8
(-2)
P 		103.6
(-2.2)
P 		91.2
(-3)
P 		186.1
(2.9)
P 		187.2
(3)
P 		96
avr 131.5
(-1) 		129.8
(-1.1) 		95.6
(-3) 		111.6
(-2.1) 		202.3
(3) 		183.5
(1.9) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180355_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10496
Sequence Type Exemplar sequence
Representative Public ID C55C3.5 NCBI
Target Description C55C3.5 /REP_DB=WormBase Gene ID /WP=CE06992 /TR=Q18867 /GB=AAA96171.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068447(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068447 NCBI Caenorhabditis elegans C55C3.5 (C55C3.5) mRNA, complete cds. 11/11 None
SNAP00000018116 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5696117:5700257:-1 11/11 None
GENEFINDER00000018121 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5696117:5703263:-1 11/11 None
C55C3.5 ENSEMBL cdna:known chromosome:CEL140:IV:5695769:5703453:-1 gene:C55C3.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5696122-5699728(-) 97.45 100.0
Public Domain and Genome References
Gene Title
Ensembl C55C3.5
Entrez Gene 177348 Entrez gene
SwissProt Q18867 EMBL-EBI
WormBase CE29735 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500848 C55C3.5 [Caenorhabditis elegans] gb|AAA96171.2| Hypothetical protein C55C3.5 [Caenorhabditis elegans] 0.0
blast CAE72664 Hypothetical protein CBG19878 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180355_AT
ctccgagtgctatttccaagttaatgttaatgcaaagggacggcccacaattacggctac
aaattcttcgctgcaattgacgaaaaaatcggaattttactttaaaaatttcaaaaaatc
ggaaataactgatcgtattcatcttcaagtcgtaaatccacaacaacagaaaacaactgt
attcgtgtctcttgtactcacaatcacagcagcactccgtccttctttcgataacggaac
actacgaactggtgttgatctacttgaaaccaatattgtaatggaaaatggagcatttcc
aaaagcatggggagcatttatgacagatcttattcgaggaatgattatggatatgatgtg
gcctgaaatgcagagtgcaattgaagatttaacatatggaaaaggcctgaaattgagcaa
attctgtggaattgatcctaataatgtggcgattgaaatagccgaaggaagtttctctct
gtcaactcgtctcgttttgccaatgttccagtcagaaatttgtctgaaagacctcaaaag
ttccattccaaacacttcgaaacttcttcaaaagtctcaggcttcatcgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCGAGTGCTATTTCCAAGTTAAT 542 233 687 Antisense
GCAAAGGGACGGCCCACAATTACGG 621 283 718 Antisense
TACGGCTACAAATTCTTCGCTGCAA 51 647 738 Antisense
AACTGATCGTATTCATCTTCAAGTC 40 143 813 Antisense
TGTATTCGTGTCTCTTGTACTCACA 461 561 864 Antisense
TGTACTCACAATCACAGCAGCACTC 606 559 879 Antisense
GTCCTTCTTTCGATAACGGAACACT 165 303 905 Antisense
GCCGAAGGAAGTTTCTCTCTGTCAA 453 285 1147 Antisense
TCGTTTTGCCAATGTTCCAGTCAGA 571 603 1178 Antisense
GTTCCATTCCAAACACTTCGAAACT 338 441 1226 Antisense
TCAAAAGTCTCAGGCTTCATCGTTT 130 629 1254 Antisense
Sequence Source Affymetrix Proprietary Database