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[180354_at]

Description T05A7.2 /REP_DB=WormBase Gene ID /WP=CE02858 /TR=Q22205 /GB=AAA81117.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 40      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 7.3
(-2.5)
A 		7
(-3)
A 		10.6
(3)
A 		10.4
(2.7)
A 		4
B 3.2
(-3)
A 		4.6
(-2.2)
A 		13.2
(3)
A 		7.2
(-0.6)
A 		10
C 10.3
(0.9)
A 		8.5
(-3)
A 		11.3
(3)
A 		8.9
(-2.1)
A 		3
avr 6.9
(-2.8) 		6.7
(-3) 		11.7
(3) 		8.8
(-0.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 13.5
(3)
A 		5.1
(-2.4)
A 		4.8
(-2.6)
A 		4.8
(-2.6)
A 		6.8
(-1.3)
A 		4.1
(-3)
A 		9
B 7.7
(-0)
A 		4
(-2.6)
A 		6.4
(-1)
A 		9.7
(1.4)
A 		12
(3)
A 		3.5
(-3)
A 		9
C 17.4
(0.1)
A 		10.3
(-2.1)
A 		12.8
(-1.3)
A 		8.9
(-2.5)
A 		7.4
(-3)
A 		27
(3)
A 		20
avr 12.9
(3) 		6.5
(-3) 		8
(-1.6) 		7.8
(-1.8) 		8.7
(-0.9) 		11.5
(1.7) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.7
(2.5)
A 		1.5
(-3)
A 		2.8
(3)
A 		1.5
(-3)
A 		1
B 1
(-3)
A 		1.1
(-2.7)
A 		3.1
(3)
A 		1.5
(-1.6)
A 		2
C 3.4
(1.8)
A 		2.5
(-0.5)
A 		3.9
(3)
A 		1.5
(-3)
A 		2
avr 2.4
(0) 		1.7
(-2.3) 		3.3
(3) 		1.5
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.5
(3)
A 		1.8
(0.2)
A 		1
(-3)
A 		1.2
(-2.2)
A 		2.1
(1.4)
A 		1
(-3)
A 		2
B 2.7
(-0.7)
A 		1.3
(-3)
A 		1.5
(-2.7)
A 		2.6
(-0.8)
A 		4.9
(3)
A 		1.3
(-3)
A 		4
C 6.4
(0.8)
A 		3.1
(-1.9)
A 		3.3
(-1.8)
A 		1.8
(-3)
A 		2.4
(-2.5)
A 		9
(3)
A 		7
avr 3.9
(3) 		2.1
(-2.4) 		1.9
(-3) 		1.9
(-3) 		3.1
(0.6) 		3.8
(2.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180354_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5738
Sequence Type Exemplar sequence
Representative Public ID T05A7.2 NCBI
Target Description T05A7.2 /REP_DB=WormBase Gene ID /WP=CE02858 /TR=Q22205 /GB=AAA81117.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062425(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062425 NCBI Caenorhabditis elegans T05A7.2 (T05A7.2) mRNA, complete cds. 11/11 None
SNAP00000043917 ENSEMBL cdna:SNAP chromosome:CEL140:II:4674460:4675716:1 11/11 None
T05A7.2 ENSEMBL cdna:known chromosome:CEL140:II:4674460:4675716:1 gene:T05A7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043923 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4674458-4675715(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05A7.2
Entrez Gene 188082 Entrez gene
SwissProt Q22205 EMBL-EBI
WormBase CE02858 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494826 T05A7.2 [Caenorhabditis elegans] gb|AAA81117.1| Hypothetical protein T05A7.2 [Caenorhabditis elegans] 1.0E-142
blast CAE67851 Hypothetical protein CBG13439 [Caenorhabditis briggsae] 6.0E-93
blast CAE65367 Hypothetical protein CBG10312 [Caenorhabditis briggsae] 1.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.2E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494826.1 1 5-27
T05A7.2 1 5-27
SNAP00000043917 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:180354_AT
ggtgaagcaccggacagctgaagccaactgcgcatcttatggaggaactctagtgaatat
tagaaattctattgataaccgagcagtcacccagtttgttggaaatattggcttgagctt
ctggattggtgtctactgcctggaatccaataatccatcttcttgctattttgatgatga
cctaggaactgataccgctttcaacaattttgcaaaaggatttccaaataccgatattgg
aggatgtgtctacagtgcaactagtgggtctttggctggacaatggattagttcagagtg
tgataatgtggaaatggcatatgtttgtgaaattccgatgacaagagcagattcctgcgc
tcacaattacaatggctactgctacataatgtctcatgaaaactcgacatctcccatcct
ttcattcaatgatgcctacaaatcctgtcaagacaactgtgcaaacctggtctctattca
ctcgagaagagagctcagctacattcaaggaatctacagcccattcaatatatcgagtgt
tacaattggcggtctatcaacggctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGAAGCACCGGACAGCTGAAGCC 451 501 138 Antisense
GAAGCCAACTGCGCATCTTATGGAG 469 345 157 Antisense
ATTGATAACCGAGCAGTCACCCAGT 187 3 208 Antisense
GGCTTGAGCTTCTGGATTGGTGTCT 676 535 247 Antisense
ATTGGTGTCTACTGCCTGGAATCCA 237 5 262 Antisense
ATCCAATAATCCATCTTCTTGCTAT 383 41 282 Antisense
GACCTAGGAACTGATACCGCTTTCA 409 381 316 Antisense
ATTCCTGCGCTCACAATTACAATGG 562 7 488 Antisense
TCATGAAAACTCGACATCTCCCATC 253 621 531 Antisense
AACCTGGTCTCTATTCACTCGAGAA 142 147 601 Antisense
ACAATTGGCGGTCTATCAACGGCTC 434 115 679 Antisense
Sequence Source Affymetrix Proprietary Database