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[180352_at]

Description F23H12.3 /REP_DB=WormBase Gene ID /WP=CE05706 /TR=Q19762 /GB=CAA98941.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 71      6grp_total > 92      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 603
1 2 3 4 range
A 291.1
(-2.2)
P 		309.1
(-1.9)
P 		237.7
(-3)
P 		645.1
(3)
P 		407
B 402.2
(-1.4)
P 		250
(-2.9)
P 		243.1
(-3)
P 		840.5
(3)
P 		597
C 343.8
(-1.6)
P 		242.4
(-3)
P 		255.9
(-2.8)
P 		684.1
(3)
P 		442
avr 345.7
(-1.7) 		267.2
(-2.7) 		245.6
(-3) 		723.2
(3) 		478

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 365.8
(2.2)
P 		284.7
(-3)
P 		296.6
(-2.2)
P 		340.1
(0.6)
P 		377.4
(3)
P 		287.7
(-2.8)
P 		93
B 311.3
(-0.8)
P 		297.1
(-1.5)
P 		275
(-2.7)
P 		310.5
(-0.9)
P 		387.1
(3)
P 		268.3
(-3)
P 		119
C 340.2
(-0.7)
P 		422.6
(3)
P 		289
(-3)
P 		338.8
(-0.8)
P 		306.6
(-2.2)
P 		300.6
(-2.5)
P 		134
avr 339.1
(1.5) 		334.8
(1.1) 		286.9
(-2.9) 		329.8
(0.7) 		357
(3) 		285.5
(-3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 106
(3)
P 		67.1
(-2.3)
P 		62.1
(-3)
P 		94.4
(1.4)
P 		44
B 128.2
(0.5)
P 		61.8
(-2.7)
P 		56.3
(-3)
P 		179.1
(3)
P 		123
C 113.8
(2.8)
P 		69.7
(-3)
P 		89.2
(-0.4)
P 		115.4
(3)
P 		46
avr 116
(1.7) 		66.2
(-3) 		69.2
(-2.7) 		129.6
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 67.4
(-2.7)
P 		101.3
(1.5)
P 		64.6
(-3)
P 		86.3
(-0.4)
P 		113.9
(3)
P 		70.1
(-2.3)
P 		49
B 108.3
(-0.2)
P 		98.9
(-0.9)
P 		66.8
(-3)
P 		82.2
(-2)
P 		157.3
(3)
P 		100.1
(-0.8)
P 		91
C 126.1
(2.7)
P 		128.9
(3)
P 		73.6
(-2.5)
P 		68.1
(-3)
P 		99.2
(0.1)
P 		100.6
(0.2)
P 		61
avr 100.6
(0.5) 		109.7
(1.5) 		68.3
(-3) 		78.9
(-1.8) 		123.5
(3) 		90.3
(-0.6) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180352_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13847
Sequence Type Exemplar sequence
Representative Public ID F23H12.3 NCBI
Target Description F23H12.3 /REP_DB=WormBase Gene ID /WP=CE05706 /TR=Q19762 /GB=CAA98941.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073693(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073693 NCBI Caenorhabditis elegans F23H12.3 (F23H12.3) mRNA, complete cds. 10/11 None
F23H12.3 ENSEMBL cdna:known chromosome:CEL140:V:12348523:12352978:1 gene:F23H12.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020008 7/11 Cross Hyb Matching Probes None
SNAP00000020009 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12350798-12352949(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23H12.3
Entrez Gene 184911 Entrez gene
SwissProt Q19762 EMBL-EBI
WormBase CE31912 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98941 Hypothetical protein F23H12.3 [Caenorhabditis elegans] ref|NP_506094.2| F23H12.3 [Caenorhabditis elegans] 3.0E-91
blast CAE75462 Hypothetical protein CBG23460 [Caenorhabditis briggsae] 4.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506094.2 2 91-113,118-140
F23H12.3 2 91-113,118-140
Sequence
Target Sequence 
>C. ELEGANS:180352_AT
agtctatgcgcaggatcattcaccggctctcagtcagaagatcaaagttcctcaaaaaca
gtacagttcccaagaggatccattgagaagaatggcaactccagtttttgataagcacga
gcaagaaaatcgtaaaaaaggtccctcgtcagctgcaacggtacttgccctttctggtct
tttcgtcgtcggcaccacccttattctcagcgggattatcgttttaattgtgcaacaaga
accaccatttgtagtcactggatgtcttttccttggaattggagtggcaatgcttctggt
ttgtgtggctcttcaacgaaagaatcttgtgaaatttgtactcgacatcaatcgagattt
atattttttgaatatgagcaaatcctacatgttcaaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCTATGCGCAGGATCATTCACCG 463 59 66 Antisense
TCACCGGCTCTCAGTCAGAAGATCA 653 625 85 Antisense
GTACAGTTCCCAAGAGGATCCATTG 162 461 126 Antisense
GAAGAATGGCAACTCCAGTTTTTGA 706 339 152 Antisense
GTAAAAAAGGTCCCTCGTCAGCTGC 176 299 197 Antisense
CCTCGTCAGCTGCAACGGTACTTGC 284 265 209 Antisense
ACCACCCTTATTCTCAGCGGGATTA 114 85 259 Antisense
GAACCACCATTTGTAGTCACTGGAT 529 345 304 Antisense
GTCACTGGATGTCTTTTCCTTGGAA 112 465 319 Antisense
AATGCTTCTGGTTTGTGTGGCTCTT 690 165 354 Antisense
GAGCAAATCCTACATGTTCAAATCA 18 391 441 Antisense
Sequence Source Affymetrix Proprietary Database