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[180351_at]

Description F29A7.7 /REP_DB=WormBase Gene ID /WP=CE09778 /TR=O16209 /GB=AAB65277.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 27      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 13.3
(-3)
A 		23.8
(-0)
A 		34.5
(3)
A 		30.8
(2)
A 		21
B 27
(3)
P 		13.8
(-0.7)
A 		5.7
(-3)
A 		23.6
(2)
A 		21
C 26.8
(-0.1)
A 		51
(3)
P 		3.8
(-3)
A 		36
(1.1)
P 		47
avr 22.4
(-0) 		29.5
(2.8) 		14.7
(-3) 		30.1
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 59.5
(3)
P 		20.6
(-2)
A 		30.6
(-0.7)
A 		16.3
(-2.5)
A 		19.8
(-2.1)
A 		12.5
(-3)
A 		47
B 8.2
(-2.3)
A 		9.1
(-2)
A 		26.6
(3)
A 		8.5
(-2.2)
A 		5.8
(-3)
A 		7.8
(-2.4)
A 		21
C 13.2
(-0.9)
A 		25.5
(1.2)
A 		6.7
(-2)
A 		36.1
(3)
P 		11.4
(-1.2)
A 		1
(-3)
A 		35
avr 27
(3) 		18.4
(0.4) 		21.3
(1.3) 		20.3
(1) 		12.3
(-1.4) 		7.1
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.8
(-2.6)
A 		5.2
(-2.1)
A 		9
(3)
A 		4.5
(-3)
A 		5
B 8.6
(3)
P 		3.4
(-1.3)
A 		1.3
(-3)
A 		5
(0)
A 		7
C 8.9
(0.4)
A 		14.6
(3)
P 		1.3
(-3)
A 		6.1
(-0.8)
P 		13
avr 7.4
(2.5) 		7.7
(3) 		3.9
(-3) 		5.2
(-0.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 11
(3)
P 		7.3
(0.2)
A 		6.7
(-0.2)
A 		4.1
(-2.2)
A 		6
(-0.8)
A 		3
(-3)
A 		8
B 2.9
(-2.1)
A 		3
(-2)
A 		6.5
(3)
A 		2.3
(-3)
A 		2.4
(-2.9)
A 		2.9
(-2.1)
A 		4
C 4.9
(0.7)
A 		7.8
(3)
A 		1.7
(-1.9)
A 		7.3
(2.6)
P 		3.7
(-0.3)
A 		0.3
(-3)
A 		8
avr 6.3
(3) 		6
(2.6) 		5
(1.1) 		4.6
(0.6) 		4
(-0.3) 		2.1
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180351_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5316
Sequence Type Exemplar sequence
Representative Public ID F29A7.7 NCBI
Target Description F29A7.7 /REP_DB=WormBase Gene ID /WP=CE09778 /TR=O16209 /GB=AAB65277.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061950(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061950 NCBI Caenorhabditis elegans F29A7.7 (F29A7.7) mRNA, complete cds. 11/11 None
SNAP00000030195 ENSEMBL cdna:SNAP chromosome:CEL140:II:2756178:2757018:-1 9/11 None
GENEFINDER00000030204 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2756021:2757018:-1 11/11 None
F29A7.7 ENSEMBL cdna:known chromosome:CEL140:II:2756021:2757018:-1 gene:F29A7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2756019-2757017(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29A7.7
Entrez Gene 185106 Entrez gene
SwissProt O16209 EMBL-EBI
WormBase CE09778 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65277 Hypothetical protein F29A7.7 [Caenorhabditis elegans] ref|NP_494351.1| F29A7.7 [Caenorhabditis elegans] 1.0E-109
blast AAB65277 Hypothetical protein F29A7.7 [Caenorhabditis elegans] ref|NP_494351.1| F29A7.7 [Caenorhabditis elegans] 5.0E-86
blast CAE72415 Hypothetical protein CBG19577 [Caenorhabditis briggsae] 1.0E-12
blast CAE72415 Hypothetical protein CBG19577 [Caenorhabditis briggsae] 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:180351_AT
gtattactatgtcagtccttacttctaagcttatctgcagaagttaacaacggcaataag
gatggagtagaatcatttaaaatgataaaagtgcatggaaaggtggcttatcactcccca
agcacccagggaattctactggaagtcggagaatgtgtccagaaatgttacgaaaatgaa
gattgcattttgtgttatatgaacgatggctactgtatgatttatcactacagttctgaa
ggagcaattgtagctttaaagagacctggatccgtggtgatatgcactaagagtgtcata
ataaaacctcgcgaaactacacgggacgatgcgaaaaactattgtgagaagtttggttgg
aaagtgactggtattgcgacagaggaggaggtgaagaagatcggaagtaacagtttgttt
tggcttgacggattttcgacaaaatgtgatgagtctggttgtgagaagtattactatacc
gatggctataccactgatggatatcttggcacaccacaatttctcgtttcgccagatgtg
tg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTACTATGTCAGTCCTTACTTC 359 451 37 Antisense
GTCCTTACTTCTAAGCTTATCTGCA 108 477 51 Antisense
TGGAAAGGTGGCTTATCACTCCCCA 616 547 132 Antisense
CTCCCCAAGCACCCAGGGAATTCTA 215 233 150 Antisense
GATGGCTACTGTATGATTTATCACT 336 407 241 Antisense
GAGACCTGGATCCGTGGTGATATGC 207 395 297 Antisense
ACCTCGCGAAACTACACGGGACGAT 318 85 342 Antisense
AACAGTTTGTTTTGGCTTGACGGAT 219 123 445 Antisense
TATACCGATGGCTATACCACTGATG 398 657 511 Antisense
ATCTTGGCACACCACAATTTCTCGT 388 29 539 Antisense
AATTTCTCGTTTCGCCAGATGTGTG 423 175 554 Antisense
Sequence Source Affymetrix Proprietary Database