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[180350_s_at]

Description M01G12.5 /REP_DB=WormBase Gene ID /WP=CE18888 /TR=Q9XUS1 /GB=CAB04614.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 04      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 11.1
(0.1)
A 		5.3
(-2)
A 		2.6
(-3)
A 		19
(3)
A 		16
B 2.5
(-3)
A 		7.2
(3)
A 		4.9
(0.1)
A 		6.7
(2.4)
A 		5
C 14.3
(-1.4)
A 		7.7
(-3)
A 		10.2
(-2.4)
A 		32.5
(3)
A 		25
avr 9.3
(-1.5) 		6.7
(-2.6) 		5.9
(-3) 		19.4
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 8.7
(0.4)
A 		12.8
(3)
A 		11.8
(2.4)
A 		3.4
(-3)
A 		6
(-1.3)
A 		6.6
(-1)
A 		9
B 15.9
(3)
A 		11.7
(0.3)
A 		8
(-2)
A 		14.4
(2)
A 		6.5
(-3)
A 		10.3
(-0.6)
A 		9
C 43.6
(3)
A 		14.2
(-1.3)
A 		5.2
(-2.6)
A 		8.9
(-2.1)
A 		3
(-2.9)
A 		2.6
(-3)
A 		41
avr 22.7
(3) 		12.9
(-0.4) 		8.3
(-1.9) 		8.9
(-1.7) 		5.2
(-3) 		6.5
(-2.6) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 4.1
(3)
A 		1.1
(-2.3)
A 		0.7
(-3)
A 		2.8
(0.7)
A 		3
B 0.8
(-3)
A 		1.8
(3)
A 		1.1
(-1.2)
A 		1.4
(0.6)
A 		1
C 4.7
(1.5)
A 		2.2
(-3)
A 		3.6
(-0.5)
A 		5.5
(3)
A 		3
avr 3.2
(3) 		1.7
(-3) 		1.8
(-2.6) 		3.2
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.6
(-1.8)
A 		4.5
(3)
A 		2.6
(-0.2)
A 		0.9
(-3)
A 		1.8
(-1.5)
A 		1.6
(-1.8)
A 		4
B 5.5
(3)
A 		3.9
(0.3)
A 		1.9
(-3)
A 		3.8
(0.2)
A 		2.6
(-1.8)
A 		3.8
(0.2)
A 		4
C 16.2
(3)
A 		4.3
(-1.7)
A 		1.3
(-2.8)
A 		1.8
(-2.6)
A 		1
(-3)
A 		0.9
(-3)
A 		15
avr 7.8
(3) 		4.2
(-0.6) 		1.9
(-2.9) 		2.2
(-2.6) 		1.8
(-3) 		2.1
(-2.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180350_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1083
Sequence Type Exemplar sequence
Representative Public ID M01G12.5 NCBI
Target Description M01G12.5 /REP_DB=WormBase Gene ID /WP=CE18888 /TR=Q9XUS1 /GB=CAB04614.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060666(11), NM_060665(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060666 NCBI Caenorhabditis elegans M01G12.2 (M01G12.2) mRNA, complete cds. 11/11 None
NM_060665 NCBI Caenorhabditis elegans M01G12.5 (M01G12.5) mRNA, complete cds. 11/11 None
GENEFINDER00000024234 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12134577:12139503:1 11/11 None
SNAP00000024229 ENSEMBL cdna:SNAP chromosome:CEL140:I:12138192:12139503:1 11/11 None
SNAP00000024230 ENSEMBL cdna:SNAP chromosome:CEL140:I:12140675:12143760:-1 11/11 None
GENEFINDER00000024233 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12140675:12144587:-1 11/11 None
M01G12.5 ENSEMBL cdna:known chromosome:CEL140:I:12138192:12139503:1 gene:M01G12.5 11/11 None
M01G12.2 ENSEMBL cdna:known chromosome:CEL140:I:12140675:12141832:-1 gene:M01G12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12138122-12139434(+) 100.0 100.0
chrI:12140605-12141836(-) 89.34 89.34
Public Domain and Genome References
Gene Title

Ensembl M01G12.5
M01G12.2
Entrez Gene 187379 Entrez gene
187382 Entrez gene
SwissProt O62309 EMBL-EBI
Q9XUS1 EMBL-EBI
WormBase CE18067 Wormbase
CE18888 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04614 Hypothetical protein M01G12.5 [Caenorhabditis elegans] ref|NP_493066.1| M01G12.5 [Caenorhabditis elegans] 1.0E-153
blast T23663 hypothetical protein M01G12.3 - Caenorhabditis elegans 1.0E-153
blast CAB04614 Hypothetical protein M01G12.5 [Caenorhabditis elegans] ref|NP_493066.1| M01G12.5 [Caenorhabditis elegans] 1.0E-152
blast AAG24115 Serpentine receptor, class t protein 20 [Caenorhabditis elegans] ref|NP_504180.2| Serpentine Receptor, class T family member (srt-20) [Caenorhabditis elegans] 1.0E-145
blast CAB04610 Hypothetical protein M01G12.1 [Caenorhabditis elegans] ref|NP_493068.1| Serpentine Receptor, class I family member (sri-14) [Caenorhabditis elegans] 1.0E-137
blast CAB04120 Hypothetical protein M01G12.13 [Caenorhabditis elegans] emb|CAB04621.2| Hypothetical protein M01G12.13 [Caenorhabditis elegans] ref|NP_493069.2| Serpentine Receptor, class I family member (sri-13) [Caenorhabditis elegans] 1.0E-136
blast CAB04614 Hypothetical protein M01G12.5 [Caenorhabditis elegans] ref|NP_493066.1| M01G12.5 [Caenorhabditis elegans] 1.0E-134
blast CAB04614 Hypothetical protein M01G12.5 [Caenorhabditis elegans] ref|NP_493066.1| M01G12.5 [Caenorhabditis elegans] 1.0E-131
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 5.5E-101
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.3E-70
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024234 7 45-67,80-102,117-139,160-182,213-230,251-273,278-300
GENEFINDER00000024233 5 15-37,57-79,99-118,139-161,195-217
Sequence
Target Sequence 
>C. ELEGANS:180350_S_AT
ccgtcacctcctgtttggaattttgctatatcagaattcaaaaagaagaacttcaaattg
tccaatggcaagctcaagaaaatgaatttcatttggataaacttagaaaccaatatggaa
ttgtcttgtgagaaaacaggtgctcaaatggctcaggacaaggagttcaaggttttatcg
attcccctagctggtgatgctggaaaatttgtggttttctttcccgaaaatcaagaggaa
acaatcgaggaaagtttgaagaaactgaacactagaaaattccagcgcctcattgatgac
cttgttcccaagtttatacattttgaacatccggtcttcaaaatccagtcaaaatttttc
atctcggagaatttgactatgaccgatagagggcttactcatgaaaaagaatttgaagtg
tgtcacggggaaaacaacgattttcgaagaggacttctcatggatcgctgcgaatatgtg
ccgtacatttttcgagtgaaccgtccgtttatcttttgtgttgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGTCACCTCCTGTTTGGAATTTTG 508 263 250 Antisense
AACAGGTGCTCAAATGGCTCAGGAC 230 137 384 Antisense
CAAGGTTTTATCGATTCCCCTAGCT 691 183 417 Antisense
ATTCCCCTAGCTGGTGATGCTGGAA 270 9 430 Antisense
CACTAGAAAATTCCAGCGCCTCATT 266 195 519 Antisense
CCTCATTGATGACCTTGTTCCCAAG 527 267 537 Antisense
TCCGGTCTTCAAAATCCAGTCAAAA 121 595 579 Antisense
AAGAGGACTTCTCATGGATCGCTGC 216 153 696 Antisense
GGATCGCTGCGAATATGTGCCGTAC 375 513 711 Antisense
GTGCCGTACATTTTTCGAGTGAACC 51 477 727 Antisense
CCGTCCGTTTATCTTTTGTGTTGTG 336 265 750 Antisense
Sequence Source Affymetrix Proprietary Database