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[180348_at]

Description B0207.8 /REP_DB=WormBase Gene ID /WP=CE07686 /TR=O01430 /GB=AAB52462.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 39.4
(1.2)
A 		7.4
(-3)
A 		46.1
(2.1)
A 		52.9
(3)
A 		46
B 35.1
(3)
A 		5.7
(-2.9)
A 		5
(-3)
A 		12.5
(-1.5)
A 		30
C 32.1
(-0.4)
A 		30.2
(-0.6)
A 		4.5
(-3)
A 		69.1
(3)
P 		65
avr 35.5
(1.2) 		14.4
(-3) 		18.5
(-2.2) 		44.8
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 96.8
(3)
A 		7.7
(-2.9)
A 		43.9
(-0.5)
A 		6
(-3)
A 		59.5
(0.5)
A 		5.7
(-3)
A 		91
B 26.5
(1.4)
A 		30
(3)
A 		26.6
(1.5)
A 		29.2
(2.6)
A 		22.2
(-0.5)
A 		16.7
(-3)
A 		13
C 30.3
(1.6)
A 		15.6
(-1.1)
A 		17.9
(-0.7)
A 		37.8
(3)
A 		22.2
(0.1)
A 		5.2
(-3)
A 		33
avr 51.2
(3) 		17.8
(-1.8) 		29.5
(-0.1) 		24.3
(-0.8) 		34.6
(0.6) 		9.2
(-3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.3
(3)
A 		1.6
(-3)
A 		12
(1.9)
A 		7.7
(-0.1)
A 		13
B 11.2
(3)
A 		1.4
(-2.9)
A 		1.2
(-3)
A 		2.7
(-2.1)
A 		10
C 10.6
(2.3)
A 		8.7
(1.2)
A 		1.6
(-3)
A 		11.7
(3)
P 		10
avr 12
(3) 		3.9
(-3) 		4.9
(-2.3) 		7.4
(-0.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 17.8
(2.9)
A 		2.7
(-2.5)
A 		9.6
(-0)
A 		1.5
(-3)
A 		18
(3)
A 		1.4
(-3)
A 		17
B 9.2
(1.7)
A 		10
(3)
A 		6.5
(-2.5)
A 		7.7
(-0.6)
A 		9
(1.4)
A 		6.2
(-3)
A 		4
C 11.2
(3)
A 		4.8
(-1)
A 		4.6
(-1.2)
A 		7.6
(0.7)
A 		7.2
(0.5)
A 		1.7
(-3)
A 		10
avr 12.7
(3) 		5.8
(-1.3) 		6.9
(-0.6) 		5.6
(-1.4) 		11.4
(2.2) 		3.1
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180348_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1077
Sequence Type Exemplar sequence
Representative Public ID B0207.8 NCBI
Target Description B0207.8 /REP_DB=WormBase Gene ID /WP=CE07686 /TR=O01430 /GB=AAB52462.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059316(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059316 NCBI Caenorhabditis elegans B0207.8 (B0207.8) mRNA, complete cds. 11/11 None
B0207.8 ENSEMBL cdna:known chromosome:CEL140:I:5959271:5959877:-1 gene:B0207.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5959270-5959832(-) 99.53 99.53
Public Domain and Genome References
Gene Title
Ensembl B0207.8
Entrez Gene 181837 Entrez gene
SwissProt O01430 EMBL-EBI
WormBase CE07686 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52462 Hypothetical protein B0207.8 [Caenorhabditis elegans] ref|NP_491717.1| B0207.8 [Caenorhabditis elegans] 1.0E-78
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491717.1 2 13-31,59-81
B0207.8 2 13-31,59-81
Sequence
Target Sequence 
>C. ELEGANS:180348_AT
atgaaagttgcctctcgtgtacaatattcatatcaatttatgattttgtataactttgag
atatttctatatttgatgaattgtcaagtgctcaagaaaattcaatttaataaaaaacat
ttcagtgagccatatacacgttttcttttcgatatctttaaaaaacatttttcatacttt
gcaatccgtttttcctttattagtcttttaccaggattttctgtggtgcatctccagttt
atgtata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAAAGTTGCCTCTCGTGTACAAT 127 45 13 Antisense
GCCTCTCGTGTACAATATTCATATC 25 283 22 Antisense
TGATGAATTGTCAAGTGCTCAAGAA 641 565 86 Antisense
TGAGCCATATACACGTTTTCTTTTC 27 569 138 Antisense
TACACGTTTTCTTTTCGATATCTTT 408 643 147 Antisense
AACATTTTTCATACTTTGCAATCCG 227 139 176 Antisense
CATACTTTGCAATCCGTTTTTCCTT 242 211 185 Antisense
TGCAATCCGTTTTTCCTTTATTAGT 605 575 192 Antisense
ATTAGTCTTTTACCAGGATTTTCTG 385 13 211 Antisense
GGATTTTCTGTGGTGCATCTCCAGT 397 509 226 Antisense
GTGGTGCATCTCCAGTTTATGTATA 177 489 235 Antisense
Sequence Source Affymetrix Proprietary Database