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[180347_s_at]

Description T13B5.8 /REP_DB=WormBase Gene ID /WP=CE13617 /TR=O17378 /GB=AAB71291.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 89      4grp_high_8_8 > 20      6grp_highest_nonorm > 82      6grp_total > 99      4grp_total > 20      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 322
1 2 3 4 range
A 422.5
(3)
P 		303.6
(-2.6)
P 		295.9
(-3)
P 		413.1
(2.6)
P 		127
B 276.9
(-1.5)
P 		395.8
(1.2)
P 		210.6
(-3)
M 		475.2
(3)
P 		265
C 426.8
(0.3)
P 		390.7
(-0.6)
P 		299.1
(-3)
P 		532.4
(3)
P 		233
avr 375.4
(0.1) 		363.4
(-0.2) 		268.5
(-3) 		473.6
(3) 		205

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 288.2
(-1)
P 		244.7
(-3)
P 		288.5
(-1)
P 		331.7
(1)
P 		375.7
(3)
P 		302.4
(-0.4)
P 		131
B 371.8
(0.9)
P 		295.7
(-0.7)
P 		296.6
(-0.7)
P 		190.3
(-3)
P 		392.5
(1.4)
P 		466.8
(3)
P 		277
C 332
(-0.5)
P 		243.7
(-2.9)
P 		350.3
(0)
P 		255.6
(-2.5)
P 		459.6
(3)
P 		238.3
(-3)
P 		221
avr 330.7
(-0.1) 		261.4
(-2.9) 		311.8
(-0.9) 		259.2
(-3) 		409.3
(3) 		335.8
(0.1) 		150
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 153.8
(3)
P 		65.9
(-2.7)
P 		77.3
(-1.9)
P 		60.5
(-3)
P 		93
B 88.3
(1.5)
P 		97.7
(2.6)
P 		48.8
(-3)
M 		101.3
(3)
P 		53
C 141.3
(3)
P 		112.3
(-0.4)
P 		104.2
(-1.3)
P 		89.8
(-3)
P 		52
avr 127.8
(3) 		92
(-1.2) 		76.8
(-3) 		83.9
(-2.2) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 53.1
(-3)
P 		87
(0.4)
P 		62.8
(-2)
P 		84.1
(0.1)
P 		113.4
(3)
P 		73.6
(-1)
P 		60
B 129.4
(0.8)
P 		98.4
(-0.7)
P 		72
(-2)
P 		50.4
(-3)
P 		159.5
(2.3)
P 		174.1
(3)
P 		124
C 123
(1.4)
P 		74.4
(-1.6)
P 		89.2
(-0.7)
P 		51.4
(-3)
P 		148.7
(3)
P 		79.8
(-1.2)
P 		97
avr 101.8
(0) 		86.6
(-1.1) 		74.7
(-2) 		62
(-3) 		140.5
(3) 		109.2
(0.6) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180347_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5293
Sequence Type Exemplar sequence
Representative Public ID T13B5.8 NCBI
Target Description T13B5.8 /REP_DB=WormBase Gene ID /WP=CE13617 /TR=O17378 /GB=AAB71291.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061516(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061516 NCBI Caenorhabditis elegans T13B5.8 (T13B5.8) mRNA, complete cds. 11/11 None
T13B5.8 ENSEMBL cdna:known chromosome:CEL140:II:1121083:1123259:-1 gene:T13B5.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001939 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1121082-1123258(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T13B5.8
Entrez Gene 173496 Entrez gene
SwissProt O17378 EMBL-EBI
WormBase CE36017 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71291 Hypothetical protein T13B5.8 [Caenorhabditis elegans] ref|NP_493917.2| T13B5.8 [Caenorhabditis elegans] 4.0E-86
blast CAE74110 Hypothetical protein CBG21770 [Caenorhabditis briggsae] 1.0E-49
Sequence
Target Sequence 
>C. ELEGANS:180347_S_AT
ggttccattggcacggaggcttataattcgtatgtacagcaattcgagcagtgggagaaa
gaagtggaggcgagaacgtcacagcaacaaaagcaccgaaaagcggcggcagttgacaag
gaggcagaagcggcggcggccgcctacgcacaatcacaagaagcctacatggcacatcat
ttgagaggaatggagcagacggaaatgcagaaaagagccgctgctgcagctcagctccag
cagcaacaaatgatgcagaatatgatgatgcagagaccgccaccagaacaccagcaacca
ccgccacaagacgtgatgttcggagccgtaggacgtgtagctcagggagctccagccgcc
gcaccaccgcccacgcaacaaccaccaccacaactatggggaaacaataagccgatctac
gatgcgcgggacccactttttgcgaaatggggtgaacgagcggcgtcggcacactgcaaa
ccggagaccgagcagcaaattaacccggtcgcctgttggctccttctagatgctctccgc
gagaagaaaatggtcctggctccgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCCATTGGCACGGAGGCTTATA 295 505 109 Antisense
GGAGGCGAGAACGTCACAGCAACAA 598 513 174 Antisense
CCGCCTACGCACAATCACAAGAAGC 579 261 248 Antisense
TGCTGCAGCTCAGCTCCAGCAGCAA 520 581 330 Antisense
CAACCACCGCCACAAGACGTGATGT 284 185 403 Antisense
GTTCGGAGCCGTAGGACGTGTAGCT 178 441 426 Antisense
CGTGTAGCTCAGGGAGCTCCAGCCG 692 243 442 Antisense
TAAGCCGATCTACGATGCGCGGGAC 378 637 516 Antisense
GTCGGCACACTGCAAACCGGAGACC 131 473 573 Antisense
CCTTCTAGATGCTCTCCGCGAGAAG 650 269 630 Antisense
AGAAGAAAATGGTCCTGGCTCCGCA 332 71 650 Antisense
Sequence Source Affymetrix Proprietary Database