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[180346_s_at]

Description Y63D3A.2 /REP_DB=WormBase Gene ID /WP=CE20333 /TR=Q9XWG1 /GB=CAA21709.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 7.8
(-2.6)
A 		4
(-3)
A 		8
(-2.5)
A 		56.3
(3)
A 		52
B 8.6
(-2.9)
A 		11.1
(-2.9)
A 		7.1
(-3)
A 		168.6
(3)
A 		162
C 29.4
(-1.3)
A 		17.1
(-2.4)
A 		10.5
(-3)
A 		78.4
(3)
A 		68
avr 15.3
(-2.6) 		10.7
(-2.9) 		8.5
(-3) 		101.1
(3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 9.1
(-2.9)
A 		10.3
(-2.8)
A 		15.5
(-2.3)
A 		8.3
(-3)
A 		19.2
(-2)
A 		73.1
(3)
A 		65
B 9.2
(-2.4)
A 		4.7
(-3)
A 		6.4
(-2.8)
A 		10.7
(-2.2)
A 		16.6
(-1.5)
A 		50.8
(3)
A 		46
C 13.5
(-1.1)
A 		7.4
(-3)
A 		10.1
(-2.2)
A 		8.6
(-2.6)
A 		10.5
(-2)
A 		26.9
(3)
A 		20
avr 10.6
(-2.6) 		7.5
(-3) 		10.7
(-2.6) 		9.2
(-2.8) 		15.4
(-1.9) 		50.3
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 2.8
(-1.4)
A 		0.9
(-3)
A 		2.1
(-2)
A 		8.2
(3)
A 		7
B 2.7
(-2.8)
A 		2.7
(-2.8)
A 		1.6
(-3)
A 		35.9
(3)
A 		34
C 9.7
(0.8)
A 		4.9
(-2.2)
A 		3.7
(-3)
A 		13.2
(3)
A 		10
avr 5.1
(-2.1) 		2.8
(-2.9) 		2.5
(-3) 		19.1
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.7
(-3)
A 		3.6
(-2.3)
A 		3.4
(-2.4)
A 		2.1
(-2.9)
A 		5.8
(-1.5)
A 		17.8
(3)
A 		16
B 3.2
(-2.4)
A 		1.6
(-3)
A 		1.6
(-3)
A 		2.8
(-2.6)
A 		6.7
(-1.2)
A 		18.9
(3)
A 		17
C 5
(-0.3)
A 		2.2
(-2.6)
A 		2.6
(-2.3)
A 		1.7
(-3)
A 		3.4
(-1.6)
A 		9
(3)
A 		7
avr 3.3
(-2.5) 		2.5
(-2.9) 		2.5
(-2.9) 		2.2
(-3) 		5.3
(-1.6) 		15.2
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180346_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1066
Sequence Type Exemplar sequence
Representative Public ID Y63D3A.2 NCBI
Target Description Y63D3A.2 /REP_DB=WormBase Gene ID /WP=CE20333 /TR=Q9XWG1 /GB=CAA21709.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061059(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061059 NCBI Caenorhabditis elegans Y63D3A.2 (Y63D3A.2) mRNA, complete cds. 11/11 None
Y63D3A.2 ENSEMBL cdna:known chromosome:CEL140:I:14098856:14104464:-1 gene:Y63D3A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14098794-14104390(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y63D3A.2
Entrez Gene 173275 Entrez gene
SwissProt Q9XWG1 EMBL-EBI
WormBase CE20333 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21709 Hypothetical protein Y63D3A.2 [Caenorhabditis elegans] ref|NP_493460.1| Y63D3A.2 [Caenorhabditis elegans] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0019
Sequence
Target Sequence 
>C. ELEGANS:180346_S_AT
ggatgttctacacctcaggaagctcggagaagtcagtgttcacacgagttgggatttgat
tcttgacgagttaaggggtatagagattcatcagctaatcgtcggagaatctataactcg
ccagttcaagcttctcaagcttcaagccgaggagctcgagttgaacgtcccccttacaca
ggctgatgtgatctgtcacaatctacaccggatagctctaaagtcgcccgggaacataca
atgtgaagatctgatagggatgaacatgatgcatatcgaggtttttatgatgtttgatca
cagctcccttacccaccgggagatcaacctgttccttttgcactgggtcaaaggatccaa
ccctcggatgcggtactacaggtctcctctccaggagcccctgcaatttgaagagcaatt
cgtcgcgcagattctcaaagggatcccacaccgagcaatcacgcccggtgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGTTCTACACCTCAGGAAGCTC 470 513 354 Antisense
TATAACTCGCCAGTTCAAGCTTCTC 20 661 465 Antisense
CGAGGAGCTCGAGTTGAACGTCCCC 235 249 501 Antisense
GTGATCTGTCACAATCTACACCGGA 478 483 541 Antisense
GCTCTAAAGTCGCCCGGGAACATAC 513 297 568 Antisense
ATGATGTTTGATCACAGCTCCCTTA 193 45 640 Antisense
CCTTACCCACCGGGAGATCAACCTG 397 267 660 Antisense
TCGGATGCGGTACTACAGGTCTCCT 511 603 717 Antisense
CAGGAGCCCCTGCAATTTGAAGAGC 111 209 745 Antisense
GAAGAGCAATTCGTCGCGCAGATTC 273 339 763 Antisense
CACCGAGCAATCACGCCCGGTGAGC 534 199 802 Antisense
Sequence Source Affymetrix Proprietary Database