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[180345_s_at]

Description K07H8.9 /REP_DB=WormBase Gene ID /WP=CE18029 /TR=O45180 /GB=AAC04421.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 117.9
(3)
A 		110.7
(1.3)
A 		105.4
(0.1)
A 		91.9
(-3)
A 		26
B 101
(-3)
P 		132.3
(3)
A 		115.4
(-0.2)
A 		100.9
(-3)
P 		31
C 115.3
(-1.4)
P 		96.3
(-3)
A 		120
(-1)
A 		168.7
(3)
P 		72
avr 111.4
(-3) 		113.1
(-1.9) 		113.6
(-1.5) 		120.5
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 386
1 2 3 4 5 6 range
A 78.8
(-3)
A 		93.4
(-2.7)
A 		88
(-2.8)
A 		166.4
(-1.5)
P 		276.3
(0.5)
P 		420.9
(3)
P 		342
B 93.5
(-2)
A 		35.3
(-3)
A 		92
(-2.1)
A 		119.1
(-1.6)
P 		267.2
(0.9)
P 		394.3
(3)
P 		359
C 88.2
(-3)
A 		107.8
(-2.6)
A 		90.6
(-3)
A 		184.2
(-1.2)
P 		268.4
(0.4)
P 		409
(3)
P 		321
avr 86.8
(-2.9) 		78.8
(-3) 		90.2
(-2.8) 		156.6
(-1.6) 		270.6
(0.5) 		408.1
(3) 		329
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 42.9
(3)
A 		24
(-0.8)
A 		27.5
(-0.1)
A 		13.4
(-3)
A 		30
B 32.2
(2.7)
P 		32.7
(3)
A 		26.7
(-0.2)
A 		21.5
(-3)
P 		11
C 38.2
(1.5)
P 		27.7
(-3)
A 		41.8
(3)
A 		28.4
(-2.7)
P 		14
avr 37.8
(3) 		28.1
(-0.5) 		32
(0.9) 		21.1
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 14.5
(-3)
A 		33.2
(-1.7)
A 		19.2
(-2.7)
A 		42.2
(-1.1)
P 		83.4
(1.7)
P 		102.5
(3)
P 		88
B 32.5
(-2.1)
A 		11.7
(-3)
A 		22.3
(-2.5)
A 		31.6
(-2.1)
P 		108.6
(1.3)
P 		147
(3)
P 		135
C 32.7
(-2.5)
A 		32.9
(-2.5)
A 		23.1
(-3)
A 		37.1
(-2.3)
P 		86.9
(0.4)
P 		136.9
(3)
P 		114
avr 26.6
(-2.7) 		25.9
(-2.8) 		21.5
(-3) 		37
(-2.1) 		93
(1) 		128.8
(3) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180345_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9711
Sequence Type Exemplar sequence
Representative Public ID K07H8.9 NCBI
Target Description K07H8.9 /REP_DB=WormBase Gene ID /WP=CE18029 /TR=O45180 /GB=AAC04421.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068989(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068989 NCBI Caenorhabditis elegans K07H8.9 (K07H8.9) mRNA, complete cds. 11/11 None
SNAP00000006918 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8285308:8286298:-1 11/11 None
GENEFINDER00000006933 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8285308:8286298:-1 11/11 None
K07H8.9 ENSEMBL cdna:known chromosome:CEL140:IV:8285168:8286298:-1 gene:K07H8.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8285313-8286304(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07H8.9
Entrez Gene 177620 Entrez gene
SwissProt O45180 EMBL-EBI
WormBase CE18029 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC04421 Hypothetical protein K07H8.9 [Caenorhabditis elegans] ref|NP_501390.1| K07H8.9 [Caenorhabditis elegans] 1.0E-134
blast CAE58446 Hypothetical protein CBG01583 [Caenorhabditis briggsae] 4.0E-99
blast CAB03417 Hypothetical protein T23G11.3 [Caenorhabditis elegans] ref|NP_492143.1| defective in Germ Line Development family member (gld-1) [Caenorhabditis elegans] sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppressor gld-1 (Defective in germ line development protein 1) gb|AAC46632.1| female germline-specific tumor suppressor; similar to human GAP-associated tyrosine phosphoprotein p62, PIR Accession Number A38219, and C. elegans B0280.11 gene product encoded by GenBank Accession Number U10438 prf||2116296A tumor suppressor 2.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR004087 EMBL-EBI KH 3.8E-5
Sequence
Target Sequence 
>C. ELEGANS:180345_S_AT
tcccgtcttctccaatatggtcaggctaacttctcagtgcatctcatcgatgaagagatc
ggccgactcttcatggctccaatctcaatggctgacattggaattcttgaagaatgtgga
cgagaagcacttcggtttactgatcttggcgctatgttctctgattctgatgattcgatg
cattcggatgaagatgaggtcactttgactgaaagtattaggattccagtcgagacttac
cccacttacaattttattggccgcatcattggtcctcgtggaacgacagcgaagcagctt
gagaaagataccggatgccgaatcatgatccgcggaaatcattcgaataagatgtacgga
aatgcattgcacaaaactcatggagatggaagccaagatgcaattgatttgccacttcgc
gtcattgtcgagacaagcggaccacgtcgtgaggcaactgctcggatcactgcagctctg
gaaacagtccaagttcttttggttcctcctccagatgggcgtgatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCGTCTTCTCCAATATGGTCAGG 95 597 169 Antisense
TGGTCAGGCTAACTTCTCAGTGCAT 255 551 186 Antisense
ACTCTTCATGGCTCCAATCTCAATG 427 99 234 Antisense
AGCACTTCGGTTTACTGATCTTGGC 691 75 294 Antisense
GCGCTATGTTCTCTGATTCTGATGA 676 287 317 Antisense
TTTATTGGCCGCATCATTGGTCCTC 184 673 421 Antisense
CCACTTCGCGTCATTGTCGAGACAA 513 275 580 Antisense
TCGAGACAAGCGGACCACGTCGTGA 668 601 596 Antisense
GTCGTGAGGCAACTGCTCGGATCAC 446 473 614 Antisense
CTCGGATCACTGCAGCTCTGGAAAC 138 233 629 Antisense
TTCCTCCTCCAGATGGGCGTGATGA 5 701 671 Antisense
Sequence Source Affymetrix Proprietary Database