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[180344_at]

Description C18E3.4 /REP_DB=WormBase Gene ID /WP=CE08313 /TR=O02098 /GB=AAB52944.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 40.4
(-0.2)
A 		25.5
(-1.3)
A 		3.6
(-3)
A 		83.2
(3)
A 		80
B 22.1
(1.8)
A 		4.6
(-3)
A 		10.9
(-1.3)
A 		26.4
(3)
A 		22
C 31.4
(-1)
A 		5.4
(-2.8)
A 		2.2
(-3)
A 		89.9
(3)
M 		88
avr 31.3
(-0.5) 		11.8
(-2.4) 		5.6
(-3) 		66.5
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 40.9
(2.4)
A 		19.5
(-0.6)
A 		44.9
(3)
A 		2.5
(-3)
A 		22.7
(-0.1)
A 		10.4
(-1.9)
A 		42
B 6.2
(-2.3)
A 		29.7
(1.5)
A 		16.2
(-0.7)
A 		35.1
(2.4)
A 		2
(-3)
A 		38.6
(3)
A 		37
C 20.1
(-0.6)
A 		25.2
(0.3)
A 		5.8
(-3)
A 		8.4
(-2.6)
A 		26.6
(0.5)
A 		41.5
(3)
A 		36
avr 22.4
(-0.1) 		24.8
(0.8) 		22.3
(-0.2) 		15.3
(-3) 		17.1
(-2.3) 		30.2
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 14.7
(3)
A 		5.5
(-1)
A 		0.9
(-3)
A 		12.2
(1.9)
A 		14
B 7.1
(3)
A 		1.1
(-3)
A 		2.5
(-1.6)
A 		5.6
(1.5)
A 		6
C 10.4
(1)
A 		1.6
(-2.7)
A 		0.8
(-3)
A 		15.2
(3)
M 		14
avr 10.7
(2.8) 		2.7
(-2.2) 		1.4
(-3) 		11
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 7.5
(1.5)
A 		6.9
(1.1)
A 		9.8
(3)
A 		0.6
(-3)
A 		6.9
(1.1)
A 		2.5
(-1.8)
A 		9
B 2.2
(-2.4)
A 		9.9
(1)
A 		3.9
(-1.6)
A 		9.3
(0.8)
A 		0.8
(-3)
A 		14.4
(3)
A 		14
C 7.4
(-0.1)
A 		7.7
(0)
A 		1.5
(-3)
A 		1.7
(-2.9)
A 		8.6
(0.4)
A 		13.9
(3)
A 		12
avr 5.7
(-1.3) 		8.2
(1) 		5.1
(-1.9) 		3.9
(-3) 		5.4
(-1.6) 		10.3
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180344_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1059
Sequence Type Exemplar sequence
Representative Public ID C18E3.4 NCBI
Target Description C18E3.4 /REP_DB=WormBase Gene ID /WP=CE08313 /TR=O02098 /GB=AAB52944.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058925(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058925 NCBI Caenorhabditis elegans C18E3.4 (C18E3.4) mRNA, complete cds. 11/11 None
C18E3.4 ENSEMBL cdna:known chromosome:CEL140:I:4202419:4203042:1 gene:C18E3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4202418-4203042(+) 98.9 100.0
Public Domain and Genome References
Gene Title
Ensembl C18E3.4
Entrez Gene 353382 Entrez gene
SwissProt O02098 EMBL-EBI
WormBase CE08313 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52944 Hypothetical protein C18E3.4 [Caenorhabditis elegans] ref|NP_491326.1| C18E3.4 [Caenorhabditis elegans] 2.0E-77
Sequence
Target Sequence 
>C. ELEGANS:180344_AT
tggataacaaatgctctcgttggaaatatatcaccgtagttactactactactactacac
tcgatgaattatattattacggcgcggaatgcgtgctcagctgctacgtttctgttgttt
cgatttgtaatacgcaacaatttgttgtaatcgataaaattgcactactatatatcaatt
gtgataatttaattccaaaagcttcaaagttgtatatcatcatacaaactttgttgccac
tttctagaaatctcttgattcgacaacttccaaagattttaacatttatttcccaaataa
acgttgataagcagtgtaattctccaatgtttctcaaatacttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGATAACAAATGCTCTCGTTGGAA 653 545 26 Antisense
GCTCTCGTTGGAAATATATCACCGT 385 299 38 Antisense
ATATCACCGTAGTTACTACTACTAC 339 19 53 Antisense
ATTACGGCGCGGAATGCGTGCTCAG 188 9 101 Antisense
CTCAGCTGCTACGTTTCTGTTGTTT 399 229 121 Antisense
CTACGTTTCTGTTGTTTCGATTTGT 130 227 129 Antisense
ACAAACTTTGTTGCCACTTTCTAGA 22 113 249 Antisense
GTTGCCACTTTCTAGAAATCTCTTG 143 441 258 Antisense
AAATCTCTTGATTCGACAACTTCCA 587 117 273 Antisense
GCAGTGTAATTCTCCAATGTTTCTC 156 311 336 Antisense
CTCCAATGTTTCTCAAATACTTTTT 569 233 347 Antisense
Sequence Source Affymetrix Proprietary Database