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[180343_at]

Description B0496.1 /REP_DB=WormBase Gene ID /WP=CE06713 /TR=Q17523 /GB=AAK18873.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 2.6
(-3)
A 		37.6
(2.6)
A 		2.7
(-3)
A 		40.2
(3)
A 		38
B 3.3
(-3)
A 		3.3
(-3)
A 		7
(3)
A 		3.3
(-3)
A 		4
C 7.1
(-1.9)
A 		31.6
(3)
A 		1.7
(-3)
A 		13
(-0.7)
A 		30
avr 4.3
(-2.9) 		24.2
(3) 		3.8
(-3) 		18.8
(1.4) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 3.1
(-2.9)
A 		5.1
(-2.6)
A 		3.6
(-2.9)
A 		2.8
(-3)
A 		18.3
(-0.4)
A 		38.1
(3)
A 		35
B 2.2
(-3)
A 		3.2
(-2.5)
A 		5.4
(-1.5)
A 		14.9
(3)
A 		5.4
(-1.5)
A 		8.5
(-0)
A 		13
C 2.6
(-3)
A 		8
(-2.3)
A 		2.4
(-3)
A 		3.9
(-2.8)
A 		3.5
(-2.9)
A 		49.8
(3)
A 		47
avr 2.6
(-3) 		5.4
(-2.4) 		3.8
(-2.8) 		7.2
(-2.1) 		9.1
(-1.7) 		32.1
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.9
(-2.8)
A 		8.2
(3)
A 		0.7
(-3)
A 		5.9
(1.2)
A 		8
B 1.1
(-0.3)
A 		0.8
(-2.3)
A 		1.6
(3)
A 		0.7
(-3)
A 		1
C 2.4
(-1.7)
A 		9.1
(3)
A 		0.6
(-3)
A 		2.2
(-1.9)
A 		9
avr 1.5
(-2.4) 		6
(3) 		1
(-3) 		2.9
(-0.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.8
(-2.2)
A 		0.8
(-2.9)
A 		0.7
(-2.9)
A 		5.5
(0.4)
A 		9.3
(3)
A 		9
B 0.8
(-3)
A 		1.1
(-2.4)
A 		1.3
(-2)
A 		3.9
(3)
A 		2.2
(-0.3)
A 		3.2
(1.6)
A 		3
C 1
(-2.9)
A 		2.5
(-2.3)
A 		0.6
(-3)
A 		0.8
(-2.9)
A 		1.1
(-2.8)
A 		16.7
(3)
A 		16
avr 0.8
(-3) 		1.8
(-2.3) 		0.9
(-2.9) 		1.8
(-2.3) 		2.9
(-1.6) 		9.7
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180343_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9398
Sequence Type Exemplar sequence
Representative Public ID B0496.1 NCBI
Target Description B0496.1 /REP_DB=WormBase Gene ID /WP=CE06713 /TR=Q17523 /GB=AAK18873.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068787(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068787 NCBI Caenorhabditis elegans B0496.1 (B0496.1) mRNA, complete cds. 11/11 None
SNAP00000020646 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7446374:7447403:1 11/11 None
GENEFINDER00000020659 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7446374:7447403:1 11/11 None
B0496.1 ENSEMBL cdna:known chromosome:CEL140:IV:7446374:7447403:1 gene:B0496.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7446379-7447409(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0496.1
Entrez Gene 182005 Entrez gene
SwissProt Q17523 EMBL-EBI
WormBase CE06713 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18873 Hypothetical protein B0496.1 [Caenorhabditis elegans] ref|NP_501188.1| B0496.1 [Caenorhabditis elegans] 1.0E-168
blast AAK18874 Hypothetical protein B0496.2 [Caenorhabditis elegans] ref|NP_501189.1| B0496.2 [Caenorhabditis elegans] 1.0E-110
blast NP_501139 R13A1.3 [Caenorhabditis elegans] gb|AAA81474.2| Hypothetical protein R13A1.3 [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.7E-21
Sequence
Target Sequence 
>C. ELEGANS:180343_AT
gagttctctccaaatgttaatacgatcatgattaaatctattgatcgaagatacaatcag
gtgaaactgaaaattactcgaaagtcatcttttggaattgcaatcgaagatttcattgat
tttgaaaagaagagcaagtggttggatgtcctgattcgatctgaagatggaaagaaaatg
atatatgccaattctggaatacttgctttgaattccccgattcttaagcaaaaactggaa
aacaacaagttagctgaaattataatgccatttgaatcctttgtttcaatgaaaaaacta
atgaactttcttcatcctcctttcaaaatggaacgggaaaatgttgaacaagttctggat
ctagcctcaaaatgggaaatgaagtcggttatcacaaagtatgagcaatttctcatcaaa
acacgttgtcactgccaacgatcttcaattcaagatgtcaaattggcggaaaagttcaag
atggcatcccttcttgaagaaattataaatgacggagaaactgatgtttttgctttactt
gatggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTCTCTCCAAATGTTAATACGA 495 397 277 Antisense
AAGTCATCTTTTGGAATTGCAATCG 497 157 358 Antisense
GCAAGTGGTTGGATGTCCTGATTCG 392 321 410 Antisense
GGATGTCCTGATTCGATCTGAAGAT 237 515 420 Antisense
ATAATGCCATTTGAATCCTTTGTTT 527 25 538 Antisense
ACTAATGAACTTTCTTCATCCTCCT 413 101 573 Antisense
GTTCTGGATCTAGCCTCAAAATGGG 497 443 628 Antisense
CATCAAAACACGTTGTCACTGCCAA 536 213 690 Antisense
TCACTGCCAACGATCTTCAATTCAA 270 627 705 Antisense
AAAGTTCAAGATGGCATCCCTTCTT 54 123 747 Antisense
GATGTTTTTGCTTTACTTGATGGAA 303 409 799 Antisense
Sequence Source Affymetrix Proprietary Database