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[180340_at]

Description C09E7.3 /REP_DB=WormBase Gene ID /WP=CE23536 /TR=Q9N5Z2 /GB=AAF60372.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 33      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_highest_nonorm > 51      6grp_total > 12      4grp_total > 10      6grp_highest_sub > 02      6grp_cgc > 62      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1113
1 2 3 4 range
A 511.2
(-3)
P 		537.1
(-2.8)
P 		514.4
(-3)
P 		1545.6
(3)
P 		1034
B 521.7
(-3)
P 		643.1
(-2.3)
P 		628.2
(-2.4)
P 		1596.5
(3)
P 		1075
C 590.5
(-2.4)
P 		667.6
(-1.9)
P 		484
(-3)
P 		1523.1
(3)
P 		1039
avr 541.1
(-3) 		615.9
(-2.6) 		542.2
(-3) 		1555.1
(3) 		1014

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 567
1 2 3 4 5 6 range
A 512.5
(-0.3)
P 		647.1
(1.2)
P 		818.3
(3)
P 		605.4
(0.7)
P 		474.5
(-0.7)
P 		259.4
(-3)
P 		559
B 592.5
(0.3)
P 		826.7
(3)
P 		616.4
(0.6)
P 		468.2
(-1.2)
P 		551.2
(-0.2)
P 		308.8
(-3)
P 		518
C 661.8
(1.3)
P 		802.6
(3)
P 		313.4
(-3)
P 		460.4
(-1.2)
P 		489.2
(-0.8)
P 		488.7
(-0.8)
P 		489
avr 588.9
(0.5) 		758.8
(3) 		582.7
(0.4) 		511.3
(-0.7) 		505
(-0.7) 		352.3
(-3) 		407
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 186.1
(0.8)
P 		116.6
(-3)
P 		134.5
(-2)
P 		226.2
(3)
P 		110
B 166.4
(-2.4)
P 		158.8
(-2.6)
P 		145.6
(-3)
P 		340.2
(3)
P 		195
C 195.5
(-1.2)
P 		191.9
(-1.4)
P 		168.7
(-3)
P 		256.8
(3)
P 		88
avr 182.7
(-1.4) 		155.8
(-2.7) 		149.6
(-3) 		274.4
(3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 94.5
(-1.9)
P 		230.1
(3)
P 		178.2
(1.1)
P 		153.5
(0.2)
P 		143.2
(-0.1)
P 		63.1
(-3)
P 		167
B 206.2
(0.4)
P 		275.2
(3)
P 		149.7
(-1.7)
P 		124
(-2.7)
P 		223.9
(1.1)
P 		115.1
(-3)
P 		160
C 245.3
(3)
P 		244.9
(3)
P 		79.8
(-3)
P 		92.6
(-2.5)
P 		158.3
(-0.2)
P 		163.6
(0)
P 		166
avr 182
(0) 		250.1
(3) 		135.9
(-2) 		123.4
(-2.6) 		175.1
(-0.3) 		113.9
(-3) 		136
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180340_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7691
Sequence Type Exemplar sequence
Representative Public ID C09E7.3 NCBI
Target Description C09E7.3 /REP_DB=WormBase Gene ID /WP=CE23536 /TR=Q9N5Z2 /GB=AAF60372.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066038(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066038 NCBI Caenorhabditis elegans One IG domain family member (oig-1) (oig-1) mRNA, complete cds. 11/11 None
SNAP00000042842 ENSEMBL cdna:SNAP chromosome:CEL140:III:6524037:6525557:-1 11/11 None
GENEFINDER00000042857 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6524037:6525557:-1 11/11 None
C09E7.3 ENSEMBL cdna:known chromosome:CEL140:III:6524037:6525557:-1 gene:C09E7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6524035-6525556(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol oig-1
Ensembl C09E7.3
Entrez Gene 182450 Entrez gene
SwissProt Q9N5Z2 EMBL-EBI
WormBase CE23536 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60372 One ig domain protein 1 [Caenorhabditis elegans] ref|NP_498439.1| One IG domain family member (oig-1) [Caenorhabditis elegans] 2.0E-76
blast CAE66484 Hypothetical protein CBG11764 [Caenorhabditis briggsae] 6.0E-59
blast AAU87820 Hypothetical protein R07G3.9 [Caenorhabditis elegans] ref|NP_001022278.1| R07G3.9 [Caenorhabditis elegans] 2.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.0E-8
Sequence
Target Sequence 
>C. ELEGANS:180340_AT
atgttctccgagttacgaatacttcgcgacatactacttttatgctttctatcagttgga
ataaatgcgaaatcttcgcatatagaagatttagacttcacggatcacacaaatggaagt
ccaaagataagtcggtcgtcatatttcaaacaggattttcgacttggctataaactgaaa
ttattctgtgaatcaagtggaaatccacgtcctcagattgtttggtatcatcgcggagtc
gaagttaacccggatcataatagaacaattcggttctcaattcatggagacaccgtctca
tcacatctggaagttgatccaacttccattggtgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTCTCCGAGTTACGAATACTTC 373 47 13 Antisense
GAATACTTCGCGACATACTACTTTT 306 327 29 Antisense
GATTTAGACTTCACGGATCACACAA 307 429 100 Antisense
GAAGTCCAAAGATAAGTCGGTCGTC 435 261 128 Antisense
GTCGGTCGTCATATTTCAAACAGGA 146 473 143 Antisense
AACAGGATTTTCGACTTGGCTATAA 628 135 161 Antisense
GGAAATCCACGTCCTCAGATTGTTT 457 527 211 Antisense
TTGTTTGGTATCATCGCGGAGTCGA 392 705 230 Antisense
GGAGTCGAAGTTAACCCGGATCATA 17 517 247 Antisense
GAACAATTCGGTTCTCAATTCATGG 467 351 275 Antisense
GTTGATCCAACTTCCATTGGTGACA 682 437 325 Antisense
Sequence Source Affymetrix Proprietary Database