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[180339_at]

Description C13A2.7 /REP_DB=WormBase Gene ID /WP=CE08119 /TR=O16870 /GB=AAB69879.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 31      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 22.6
(3)
A 		2.4
(-3)
A 		10.4
(-0.6)
A 		11.9
(-0.2)
A 		20
B 11.1
(3)
A 		2.1
(-2.9)
A 		2
(-3)
A 		3
(-2.3)
A 		9
C 7.6
(-0.8)
A 		5.9
(-1.8)
A 		3.9
(-3)
A 		13.9
(3)
A 		10
avr 13.8
(3) 		3.5
(-3) 		5.4
(-1.9) 		9.6
(0.6) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 3.6
(-2.9)
A 		1.6
(-3)
A 		28.9
(-2.1)
A 		179.9
(3)
P 		134.8
(1.5)
A 		12.9
(-2.6)
A 		178
B 6.4
(-2.8)
A 		2.9
(-3)
A 		4.1
(-2.9)
A 		116.4
(2.4)
M 		128.8
(3)
M 		21.7
(-2.1)
A 		126
C 2
(-3)
A 		8.2
(-2.7)
A 		3.9
(-2.9)
A 		128.1
(3)
A 		126.7
(2.9)
P 		5.5
(-2.8)
A 		126
avr 4
(-3) 		4.2
(-3) 		12.3
(-2.6) 		141.5
(3) 		130.1
(2.5) 		13.4
(-2.6) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 8.2
(3)
A 		0.5
(-3)
A 		2.7
(-1.3)
A 		1.7
(-2.1)
A 		8
B 3.5
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0.6
(-2.8)
A 		3
C 2.5
(3)
A 		1.7
(-1.4)
A 		1.4
(-3)
A 		2.3
(1.9)
A 		1
avr 4.7
(3) 		0.9
(-3) 		1.5
(-2.1) 		1.5
(-2.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 0.7
(-3)
A 		0.6
(-3)
A 		6.3
(-2.2)
A 		45.6
(3)
P 		40.7
(2.3)
A 		3.1
(-2.7)
A 		45
B 2.2
(-2.9)
A 		1
(-3)
A 		1
(-3)
A 		30.8
(0.5)
M 		52.3
(3)
M 		8.1
(-2.2)
A 		51
C 0.7
(-3)
A 		2.5
(-2.7)
A 		1
(-3)
A 		25.8
(0.7)
A 		41
(3)
P 		1.8
(-2.8)
A 		40
avr 1.2
(-3) 		1.4
(-3) 		2.8
(-2.8) 		34.1
(1.5) 		44.7
(3) 		4.3
(-2.6) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180339_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11257
Sequence Type Exemplar sequence
Representative Public ID C13A2.7 NCBI
Target Description C13A2.7 /REP_DB=WormBase Gene ID /WP=CE08119 /TR=O16870 /GB=AAB69879.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072445
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000044268 ENSEMBL cdna:SNAP chromosome:CEL140:V:7267836:7271399:1 10/11 None
GENEFINDER00000044282 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7268964:7271399:1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7268964-7271400(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69875 Hypothetical protein C13A2.3 [Caenorhabditis elegans] ref|NP_504852.2| C13A2.3 [Caenorhabditis elegans] 5.0E-72
blast CAE71909 Hypothetical protein CBG18971 [Caenorhabditis briggsae] 2.0E-70
blast CAB07296 Hypothetical protein W08G11.1 [Caenorhabditis elegans] ref|NP_507132.1| W08G11.1 [Caenorhabditis elegans] pir||T26291 hypothetical protein W08G11.1 - Caenorhabditis elegans 3.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 1.0E-126
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000044282 1 13-31
Sequence
Target Sequence 
>C. ELEGANS:180339_AT
gaaagtgcattttccatgcctgatgaagtatcaaacgatgttccacaattgcataaaaac
gattttctaatgagcggagtcaatgttttccgcgttgcacttgtatcccgtgaaaagaat
gagtggattagtggtgccgcaagtattttgacagttgagagtaacgaactggatattgaa
gaggagtacagagatcggctatcttcaatagacccgcttgaattttccaaaaaatcggga
atgtacaccgaatcattcgattttgctgccacatttgcattcgtcgagagatctggtctt
ggccttaatcgtgaaccaatgaatcccatcggagatcttcgcgaaattatgaaaataaaa
tgcgttttgaaacgaggaggtctcttataccttggcattccctacggtattgactccgtt
aagtttcattctcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGTGCATTTTCCATGCCTGATG 120 361 517 Antisense
CGGAGTCAATGTTTTCCGCGTTGCA 577 239 591 Antisense
GTTGCACTTGTATCCCGTGAAAAGA 249 437 610 Antisense
GATCGGCTATCTTCAATAGACCCGC 119 419 709 Antisense
ATCATTCGATTTTGCTGCCACATTT 226 31 768 Antisense
GCCACATTTGCATTCGTCGAGAGAT 284 279 784 Antisense
TCGAGAGATCTGGTCTTGGCCTTAA 328 601 800 Antisense
TGAATCCCATCGGAGATCTTCGCGA 18 577 836 Antisense
GAGGTCTCTTATACCTTGGCATTCC 441 401 893 Antisense
GGCATTCCCTACGGTATTGACTCCG 277 535 910 Antisense
GACTCCGTTAAGTTTCATTCTCATA 96 375 928 Antisense
Sequence Source Affymetrix Proprietary Database