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[180338_at]

Description B0207.6 /REP_DB=WormBase Gene ID /WP=CE07684 /TR=O01426 /GB=AAB52461.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 83      6grp_total > 59      4grp_total > 15      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 301
1 2 3 4 range
A 506.9
(1.4)
P 		284.8
(-3)
P 		324.2
(-2.2)
P 		585.7
(3)
P 		301
B 470.2
(3)
P 		340.2
(-3)
P 		370.7
(-1.6)
P 		449.6
(2)
P 		130
C 466.1
(3)
P 		353.8
(-3)
P 		369.6
(-2.2)
P 		417.7
(0.4)
P 		112
avr 481.1
(2.9) 		326.3
(-3) 		354.8
(-1.9) 		484.3
(3) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 414
1 2 3 4 5 6 range
A 571.4
(0.1)
P 		421.2
(-2.1)
P 		357.4
(-3)
P 		543.6
(-0.3)
P 		488.2
(-1.1)
P 		771.5
(3)
P 		414
B 552.5
(2.1)
P 		392.1
(-2.6)
P 		377.7
(-3)
P 		436.5
(-1.3)
P 		584.6
(3)
P 		446.6
(-1)
P 		207
C 545.9
(0.2)
P 		427
(-3)
P 		548.9
(0.3)
P 		454.8
(-2.2)
P 		632.3
(2.6)
P 		648
(3)
P 		221
avr 556.6
(1.1) 		413.4
(-3) 		428
(-2.6) 		478.3
(-1.1) 		568.4
(1.5) 		622
(3) 		209
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 184.6
(3)
P 		61.8
(-3)
P 		84.7
(-1.9)
P 		85.7
(-1.8)
P 		123
B 150
(3)
P 		84
(-3)
P 		85.9
(-2.8)
P 		95.8
(-1.9)
P 		66
C 154.3
(3)
P 		101.7
(-0.8)
P 		128.8
(1.2)
P 		70.4
(-3)
P 		84
avr 163
(3) 		82.5
(-3) 		99.8
(-1.7) 		84
(-2.9) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 105.3
(-1.5)
P 		149.8
(0.9)
P 		77.8
(-3)
P 		137.9
(0.3)
P 		147.3
(0.8)
P 		187.8
(3)
P 		110
B 192.3
(1.1)
P 		130.5
(-1.4)
P 		91.7
(-3)
P 		115.6
(-2)
P 		237.5
(3)
P 		166.5
(0.1)
P 		146
C 202.3
(2.3)
P 		130.3
(-1.1)
P 		139.7
(-0.7)
P 		91.5
(-3)
P 		204.6
(2.4)
P 		216.9
(3)
P 		125
avr 166.6
(1.1) 		136.9
(-0.8) 		103.1
(-3) 		115
(-2.2) 		196.5
(3) 		190.4
(2.6) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180338_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.651
Sequence Type Exemplar sequence
Representative Public ID B0207.6 NCBI
Target Description B0207.6 /REP_DB=WormBase Gene ID /WP=CE07684 /TR=O01426 /GB=AAB52461.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059312(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059312 NCBI Caenorhabditis elegans B0207.6 (B0207.6) mRNA, complete cds. 11/11 None
SNAP00000009168 ENSEMBL cdna:SNAP chromosome:CEL140:I:5943672:5945079:-1 11/11 None
GENEFINDER00000009189 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5943672:5945079:-1 11/11 None
B0207.6 ENSEMBL cdna:known chromosome:CEL140:I:5943672:5945079:-1 gene:B0207.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5943671-5947147(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0207.6
Entrez Gene 172267 Entrez gene
SwissProt O01426 EMBL-EBI
WormBase CE30229 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52461 Hypothetical protein B0207.6 [Caenorhabditis elegans] ref|NP_491713.2| B0207.6 [Caenorhabditis elegans] 1.0E-152
blast CAE60423 Hypothetical protein CBG04029 [Caenorhabditis briggsae] 1.0E-137
blast XP_794415 PREDICTED: similar to CG10222-PA [Strongylocentrotus purpuratus] 5.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR004130 EMBL-EBI Conserved hypothetical ATP binding protein 2.3E-113
Sequence
Target Sequence 
>C. ELEGANS:180338_AT
taatggatcgacttggacttggaccaaatggagctctcaaatactgtattgaaacacttg
gagctaattgtaattggctcctccagaaaatcgaagcgaatcacaagaaatatctgataa
ttgattgtcccggacagttggaactatacaaaagcgaaggcgaactatggaaagttatcc
gctttttggaaaaatccggtgttagactatgtgccttacatcttgccgattcactttact
gcagtgacccatcgaaattcatttctgttgcattatccacattagcgacaatggtaacaa
tggagatgccacaagtaaactgtctgtcaaaagcagatcttttctctgaagacgggacct
atgatctcgagtttttctcccatttacctgatgtcaatcgacttttggatcttttgaatg
aagttcccggattggaaaaatatcgaaaattgaatgaagcaatttgtggagttattagcg
atttcgacctcgtttcatttgtaccacttgccgttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATGGATCGACTTGGACTTGGACC 297 635 290 Antisense
AGCTAATTGTAATTGGCTCCTCCAG 311 79 351 Antisense
TAGACTATGTGCCTTACATCTTGCC 265 653 492 Antisense
CATCTTGCCGATTCACTTTACTGCA 493 213 508 Antisense
TTACTGCAGTGACCCATCGAAATTC 597 681 525 Antisense
AATTCATTTCTGTTGCATTATCCAC 633 175 545 Antisense
GATGCCACAAGTAAACTGTCTGTCA 437 415 594 Antisense
GGGACCTATGATCTCGAGTTTTTCT 409 495 643 Antisense
TTTTCTCCCATTTACCTGATGTCAA 388 677 662 Antisense
ATTAGCGATTTCGACCTCGTTTCAT 144 13 763 Antisense
TTTCATTTGTACCACTTGCCGTTGA 539 671 782 Antisense
Sequence Source Affymetrix Proprietary Database