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[180336_at]

Description F47B10.3 /REP_DB=WormBase Gene ID /WP=CE03353 /TR=Q20503 /GB=CAA91983.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 137.3
(2.1)
A 		63.6
(-2)
A 		45.1
(-3)
A 		153.4
(3)
A 		108
B 117.4
(3)
M 		71
(-1.7)
A 		58.7
(-3)
A 		85.6
(-0.3)
A 		59
C 146.5
(3)
P 		73.3
(-1.2)
A 		42.9
(-3)
A 		118.7
(1.4)
A 		104
avr 133.7
(3) 		69.3
(-1.6) 		48.9
(-3) 		119.2
(2) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 82.8
(3)
A 		55.6
(0)
A 		44.7
(-1.2)
A 		28.1
(-3)
A 		48
(-0.8)
A 		66.7
(1.2)
A 		55
B 60.3
(2.7)
A 		49.2
(0.3)
A 		41.9
(-1.4)
A 		34.6
(-3)
A 		61.5
(3)
A 		55.2
(1.6)
A 		27
C 41.4
(-0.4)
A 		43.9
(-0.2)
A 		76.9
(3)
A 		31.8
(-1.4)
A 		14.8
(-3)
A 		56.2
(1)
A 		62
avr 61.5
(3) 		49.6
(0.6) 		54.5
(1.6) 		31.5
(-3) 		41.4
(-1) 		59.4
(2.6) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 50
(3)
A 		13.8
(-2.7)
A 		11.8
(-3)
A 		22.5
(-1.3)
A 		38
B 37.4
(3)
M 		17.5
(-2)
A 		13.6
(-3)
A 		18.2
(-1.8)
A 		24
C 48.5
(3)
P 		21.1
(-1.9)
A 		15
(-3)
A 		20
(-2.1)
A 		34
avr 45.3
(3) 		17.5
(-2.2) 		13.5
(-3) 		20.2
(-1.7) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 15.3
(0.9)
A 		19.8
(3)
A 		9.7
(-1.8)
A 		7.1
(-3)
A 		14.5
(0.5)
A 		16.2
(1.3)
A 		13
B 21
(1.5)
A 		16.4
(-0.3)
A 		10.2
(-2.6)
A 		9.2
(-3)
A 		25
(3)
A 		20.6
(1.3)
A 		16
C 15.3
(1.3)
A 		13.4
(0.5)
A 		19.6
(3)
A 		6.4
(-2.4)
A 		4.8
(-3)
A 		18.8
(2.7)
A 		15
avr 17.2
(2.3) 		16.5
(1.9) 		13.2
(0.1) 		7.6
(-3) 		14.8
(1) 		18.5
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180336_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16395
Sequence Type Exemplar sequence
Representative Public ID F47B10.3 NCBI
Target Description F47B10.3 /REP_DB=WormBase Gene ID /WP=CE03353 /TR=Q20503 /GB=CAA91983.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077418(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077418 NCBI Caenorhabditis elegans F47B10.3 (F47B10.3) mRNA, complete cds. 11/11 None
SNAP00000040445 ENSEMBL cdna:SNAP chromosome:CEL140:X:10892110:10893492:1 11/11 None
GENEFINDER00000040459 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10892629:10893492:1 11/11 None
F47B10.3 ENSEMBL cdna:known chromosome:CEL140:X:10892113:10893492:1 gene:F47B10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10892112-10893492(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B10.3
Entrez Gene 185902 Entrez gene
SwissProt Q20503 EMBL-EBI
WormBase CE03353 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91983 Hypothetical protein F47B10.3 [Caenorhabditis elegans] ref|NP_509819.1| F47B10.3 [Caenorhabditis elegans] 0.0
blast CAA91983 Hypothetical protein F47B10.3 [Caenorhabditis elegans] ref|NP_509819.1| F47B10.3 [Caenorhabditis elegans] 1.0E-180
blast CAA91983 Hypothetical protein F47B10.3 [Caenorhabditis elegans] ref|NP_509819.1| F47B10.3 [Caenorhabditis elegans] 1.0E-143
blast CAE70801 Hypothetical protein CBG17561 [Caenorhabditis briggsae] 5.0E-43
blast CAE70801 Hypothetical protein CBG17561 [Caenorhabditis briggsae] 8.0E-43
blast CAE70801 Hypothetical protein CBG17561 [Caenorhabditis briggsae] 9.0E-43
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509819.1 5 29-51,58-80,100-122,207-229,244-263
F47B10.3 5 29-51,58-80,100-122,207-229,244-263
SNAP00000040445 5 20-37,44-63,73-95,163-185,200-219
GENEFINDER00000040459 3 46-63,83-105,120-142
Sequence
Target Sequence 
>C. ELEGANS:180336_AT
attcagactatcttttgcgctttctgttgcaaatctaacccaacatcggagcatgaagca
gttcgaaatgccaagtgtataatgctttggaatattcccggtttactactcacaatgtct
gatgttgctggacaaatttatttgacggcgtattcaaactctaacgcaattcatcacaaa
gaatatttgttctccatcttgtatcctgcagctactgtattaataatgtttattacatta
cctgctttgagaaaagcaatttttccttgttgtttcacaacagacaacgataacagcgat
cgaatgttttttgttacaagagatagcatttcacaaggctcggtgggttcaccaactcca
tcggatcagtcaaatattagtacaatttcgaatccgccaattgtcacttaccccaataac
tcagtagttccatataaccctgtaactccgctttatccatatttccctatgcctaatatg
tatccacaggcatatccgcaagacttccaacaccaataccaacccctttttgtaccagtt
ccgatgacgttttataatcagtcccagtttccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCAGACTATCTTTTGCGCTTTCT 93 13 553 Antisense
GAATATTCCCGGTTTACTACTCACA 490 323 642 Antisense
GAATATTTGTTCTCCATCTTGTATC 660 325 733 Antisense
ATCTTGTATCCTGCAGCTACTGTAT 360 31 748 Antisense
TTCACAAGGCTCGGTGGGTTCACCA 192 685 882 Antisense
TTCACCAACTCCATCGGATCAGTCA 190 685 900 Antisense
TTGTCACTTACCCCAATAACTCAGT 640 703 953 Antisense
CTTTATCCATATTTCCCTATGCCTA 208 223 1003 Antisense
CCACAGGCATATCCGCAAGACTTCC 340 275 1036 Antisense
TTTTGTACCAGTTCCGATGACGTTT 149 677 1080 Antisense
TTTTATAATCAGTCCCAGTTTCCCA 560 673 1102 Antisense
Sequence Source Affymetrix Proprietary Database