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[180335_at]

Description T19D7.4 /REP_DB=WormBase Gene ID /WP=CE07520 /TR=Q22585 /GB=AAK39294.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 15      6grp_total > 16      4grp_total > 13      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 178.3
(1.2)
P 		104.3
(-3)
A 		116.9
(-2.3)
A 		210.1
(3)
P 		106
B 154.8
(0.1)
P 		124.4
(-1.2)
A 		78.5
(-3)
A 		228.1
(3)
P 		150
C 188.5
(0.1)
P 		110.4
(-2.3)
A 		89.4
(-3)
A 		282.4
(3)
P 		193
avr 173.9
(0.3) 		113
(-2.3) 		94.9
(-3) 		240.2
(3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 231.6
(3)
P 		155.7
(-0.2)
P 		123.7
(-1.5)
A 		145.7
(-0.6)
P 		161
(0.1)
P 		88
(-3)
P 		144
B 181.1
(3)
P 		180.2
(2.9)
P 		123.5
(-3)
A 		127.7
(-2.6)
P 		142.8
(-1)
P 		164.9
(1.3)
P 		58
C 162.6
(-0.3)
P 		208.4
(3)
P 		137.4
(-2.2)
P 		125.7
(-3)
P 		132.3
(-2.5)
P 		155.2
(-0.9)
P 		83
avr 191.8
(3) 		181.4
(2) 		128.2
(-3) 		133
(-2.5) 		145.4
(-1.4) 		136
(-2.3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 64.9
(3)
P 		22.6
(-3)
A 		30.5
(-1.9)
A 		30.8
(-1.8)
P 		42
B 49.4
(3)
P 		30.7
(-0.6)
A 		18.2
(-3)
A 		48.6
(2.8)
P 		31
C 62.4
(3)
P 		31.7
(-2.9)
A 		31.2
(-3)
A 		47.6
(0.2)
P 		31
avr 58.9
(3) 		28.3
(-2.7) 		26.6
(-3) 		42.3
(-0.1) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 42.7
(0.8)
P 		55.4
(3)
P 		26.9
(-2)
A 		36.9
(-0.3)
P 		48.6
(1.8)
P 		21.4
(-3)
P 		34
B 63
(3)
P 		60
(2.5)
P 		30
(-3)
A 		33.8
(-2.3)
P 		58
(2.1)
P 		61.5
(2.7)
P 		33
C 60.3
(2.5)
P 		63.6
(3)
P 		35
(-1.5)
P 		25.3
(-3)
P 		42.8
(-0.3)
P 		51.9
(1.2)
P 		38
avr 55.3
(2.1) 		59.7
(3) 		30.6
(-3) 		32
(-2.7) 		49.8
(1) 		44.9
(-0.1) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180335_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18189
Sequence Type Exemplar sequence
Representative Public ID T19D7.4 NCBI
Target Description T19D7.4 /REP_DB=WormBase Gene ID /WP=CE07520 /TR=Q22585 /GB=AAK39294.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075735(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075735 NCBI Caenorhabditis elegans T19D7.4 (T19D7.4) mRNA, complete cds. 11/11 None
SNAP00000005312 ENSEMBL cdna:SNAP chromosome:CEL140:X:658623:661756:-1 10/11 None
GENEFINDER00000005319 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:658623:661756:-1 11/11 None
T19D7.4 ENSEMBL cdna:known chromosome:CEL140:X:658520:661776:-1 gene:T19D7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:658622-661756(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19D7.4
Entrez Gene 180416 Entrez gene
SwissProt Q22585 EMBL-EBI
WormBase CE07520 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.22551.1.S1_S_AT similar to RUN domain containing 1 cfa
DROSOPHILA_2:1624554_AT dm
DROSGENOME1:142138_AT dm
CHICKEN:GGA.5268.1.S1_AT similar to hypothetical protein gga
HU35KSUBA:T34126_S_AT RUN domain containing 1 hs
HU35KSUBA:HUM_ALU_AT RUN domain containing 1 hs
HU35KSUBB:HUM_ALU_AT RUN domain containing 1 hs
HU35KSUBC:HUM_ALU_AT RUN domain containing 1 hs
HU35KSUBD:HUM_ALU_AT RUN domain containing 1 hs
HUGENEFL:HUM_ALU_AT RUN domain containing 1 hs
HC-G110:HUM_ALU_AT RUN domain containing 1 hs
HU35KSUBB:RC_N47109_AT RUN domain containing 1 hs
U133_X3P:HS.5521.0.A1_3P_AT RUN domain containing 1 hs
U133_X3P:235040_3P_AT RUN domain containing 1 hs
HG-U133_PLUS_2:226298_AT RUN domain containing 1 hs
HG-U133B:226298_AT RUN domain containing 1 hs
HG-U133_PLUS_2:235040_AT RUN domain containing 1 hs
HG-U133B:235040_AT RUN domain containing 1 hs
HG-U95B:53108_AT RUN domain containing 1 hs
HG-U95E:83238_AT RUN domain containing 1 hs
HG-U95E:82378_AT RUN domain containing 1 hs
HU35KSUBA:AA249437_AT RUN domain containing 1 hs
MG-U74BV2:114438_AT RUN domain containing 1 mm
MG-U74CV2:137612_F_AT RUN domain containing 1 mm
MOE430B:1454829_AT RUN domain containing 1 mm
MOUSE430_2:1454829_AT RUN domain containing 1 mm
MU19KSUBA:TC16271_AT RUN domain containing 1 (Rundc1), mRNA mm
MU19KSUBC:TC40042_AT RUN domain containing 1 (Rundc1), mRNA mm
RAE230B:1391739_AT RUN domain containing 1 (predicted) rn
RAT230_2:1391739_AT RUN domain containing 1 (predicted) rn
RAE230B:1383667_AT RUN domain containing 1 (predicted) rn
RAT230_2:1383667_AT RUN domain containing 1 (predicted) rn
RAE230B:1386828_AT RUN domain containing 1 (predicted) rn
RAT230_2:1386828_AT RUN domain containing 1 (predicted) rn
RG-U34C:AA012693_AT RUN domain containing 1 (predicted) rn
RG-U34B:RC_AA998102_AT RUN domain containing 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK39294 Hypothetical protein T19D7.4 [Caenorhabditis elegans] ref|NP_508136.1| T19D7.4 [Caenorhabditis elegans] 0.0
blast CAE63637 Hypothetical protein CBG08133 [Caenorhabditis briggsae] 0.0
blast AAK39294 Hypothetical protein T19D7.4 [Caenorhabditis elegans] ref|NP_508136.1| T19D7.4 [Caenorhabditis elegans] 1.0E-144
blast CAE63637 Hypothetical protein CBG08133 [Caenorhabditis briggsae] 1.0E-141
blast XP_393737 PREDICTED: similar to RUN domain containing 1 [Apis mellifera] 1.0E-82
blast XP_393737 PREDICTED: similar to RUN domain containing 1 [Apis mellifera] 4.0E-78
Sequence
Target Sequence 
>C. ELEGANS:180335_AT
atgacgaggtctttgaacgatctgaagaggaagtggtaactattgtccgaaagcagctgt
gtcttgcattgaaagcccttctagagcatgggatgctctcagaaacagtggtgcacaagc
ggataccggggttaggctgttttgtcgcaaaaagctcggcggacgagaaatcaacgtcat
tgagtcatatttgggatgtgattttatacttttataatttaaaaactggaagagacacca
cagatgctcctgtaagaaaattgagtcaatcctttaaattggatcacgtcggaggaagaa
gcataacttcaaaacaggttttgctgacaacaattgaaaacatcatctcgactcacgcaa
gattaaaaagatcaaaagatgcgcattggaaagcatttgtctcagctgctttgaatgaga
aaaaattacctgcttggttgaggatcatatttcgaacccgacaagttgtcgaaatgtgct
acaactcttggagttatgttgcaagaacaggctgtgaggaactctacacacttctcgaag
gtcttcacaaatatagtattcacttaccggttgacttggctttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACGAGGTCTTTGAACGATCTGA 421 1 1301 Antisense
GTAACTATTGTCCGAAAGCAGCTGT 392 459 1336 Antisense
GTGTCTTGCATTGAAAGCCCTTCTA 662 485 1359 Antisense
GTGGTGCACAAGCGGATACCGGGGT 545 487 1408 Antisense
GGAAGAGACACCACAGATGCTCCTG 544 531 1528 Antisense
TGAAAACATCATCTCGACTCACGCA 399 573 1635 Antisense
GCATTTGTCTCAGCTGCTTTGAATG 433 621 1693 Antisense
TGAGGATCATATTTCGAACCCGACA 650 567 1739 Antisense
GTCGAAATGTGCTACAACTCTTGGA 560 473 1768 Antisense
GAACTCTACACACTTCTCGAAGGTC 327 349 1819 Antisense
CACTTACCGGTTGACTTGGCTTTGA 9 85 1861 Antisense
Sequence Source Affymetrix Proprietary Database