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[180333_at]

Description T21D9.2 /REP_DB=WormBase Gene ID /WP=CE04990 /TR=Q22652 /GB=AAA81694.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 8
(-2.5)
A 		4.3
(-2.8)
A 		1.7
(-3)
A 		72
(3)
A 		70
B 5.7
(-2.4)
A 		6.6
(-2)
A 		4.1
(-3)
A 		19.6
(3)
A 		16
C 25.1
(1.4)
A 		28.7
(3)
A 		20.1
(-0.8)
A 		15
(-3)
A 		14
avr 12.9
(-2) 		13.2
(-2) 		8.6
(-3) 		35.5
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 10.3
(-1.9)
A 		2.9
(-2.9)
A 		4.7
(-2.6)
A 		47.3
(3)
A 		7.3
(-2.3)
A 		2
(-3)
A 		45
B 5.1
(-3)
A 		7
(-2.7)
A 		7.9
(-2.6)
A 		44.7
(3)
A 		5
(-3)
A 		6
(-2.8)
A 		40
C 6.3
(-2.6)
A 		30.9
(3)
A 		16.4
(-0.3)
A 		7.4
(-2.4)
A 		15.6
(-0.5)
A 		4.6
(-3)
A 		26
avr 7.2
(-2.4) 		13.6
(-1) 		9.7
(-1.9) 		33.1
(3) 		9.3
(-1.9) 		4.2
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.9
(-1.5)
A 		0.9
(-2.7)
A 		0.4
(-3)
A 		10.5
(3)
A 		10
B 1.8
(-1.5)
A 		1.6
(-1.9)
A 		1
(-3)
A 		4.2
(3)
A 		3
C 8.3
(3)
A 		8.3
(3)
A 		7
(1.7)
A 		2.5
(-3)
A 		6
avr 4.3
(0.1) 		3.6
(-1.3) 		2.8
(-3) 		5.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.9
(-2.3)
A 		1
(-2.7)
A 		1
(-2.7)
A 		12
(3)
A 		2.2
(-2.1)
A 		0.5
(-3)
A 		12
B 1.8
(-3)
A 		2.3
(-2.7)
A 		1.9
(-2.9)
A 		11.8
(3)
A 		2
(-2.9)
A 		2.2
(-2.8)
A 		10
C 2.4
(-2.3)
A 		9.4
(3)
A 		4.2
(-0.9)
A 		1.5
(-3)
A 		5
(-0.3)
A 		1.5
(-3)
A 		8
avr 2
(-2.5) 		4.2
(-0.6) 		2.4
(-2.1) 		8.4
(3) 		3.1
(-1.5) 		1.4
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180333_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18342
Sequence Type Exemplar sequence
Representative Public ID T21D9.2 NCBI
Target Description T21D9.2 /REP_DB=WormBase Gene ID /WP=CE04990 /TR=Q22652 /GB=AAA81694.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075986(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075986 NCBI Caenorhabditis elegans T21D9.2 (T21D9.2) mRNA, complete cds. 11/11 None
T21D9.2 ENSEMBL cdna:known chromosome:CEL140:X:2095364:2096052:-1 gene:T21D9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2095363-2096052(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T21D9.2
Entrez Gene 188691 Entrez gene
SwissProt Q22652 EMBL-EBI
WormBase CE04990 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81694 Hypothetical protein T21D9.2 [Caenorhabditis elegans] ref|NP_508387.1| T21D9.2 [Caenorhabditis elegans] 2.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508387.1 2 43-65,100-119
T21D9.2 2 43-65,100-119
Sequence
Target Sequence 
>C. ELEGANS:180333_AT
tgatacctgatcttacgttttccaagctggctgatttagaaaatcaaatgcttactgatt
ttgataatattgcattgcgttcaacaaacagtaatgatgaattaacccctgttccttcca
caaaatatgaaattttgccgattgtgatgttgatatcgttgtcgatgtcgggaatcgtca
ttattcttattttgactcgccgacgttgcttgcaagatgctgaatccgatttaactgttg
cattgtctgaaatagatatgaacgatgttcatcaaattttcgaaaccactcaagaggttt
taatctttattctggacaccgtttctgtaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATACCTGATCTTACGTTTTCCAA 668 563 14 Antisense
TACGTTTTCCAAGCTGGCTGATTTA 561 645 27 Antisense
ATTGCATTGCGTTCAACAAACAGTA 583 5 82 Antisense
AATGATGAATTAACCCCTGTTCCTT 675 161 106 Antisense
ATTTTGCCGATTGTGATGTTGATAT 301 13 145 Antisense
GATGTCGGGAATCGTCATTATTCTT 232 409 177 Antisense
TTATTCTTATTTTGACTCGCCGACG 232 679 194 Antisense
CTCGCCGACGTTGCTTGCAAGATGC 356 233 209 Antisense
GCTGAATCCGATTTAACTGTTGCAT 116 297 232 Antisense
GAGGTTTTAATCTTTATTCTGGACA 572 401 307 Antisense
TATTCTGGACACCGTTTCTGTAACA 171 663 321 Antisense
Sequence Source Affymetrix Proprietary Database