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[180331_at]

Description ZK1037.3 /REP_DB=WormBase Gene ID /WP=CE16755 /TR=O45985 /GB=CAB03502.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 18      6grp_cgc > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 23.1
(-3)
A 		75.9
(-0.7)
A 		69.4
(-1)
A 		160.2
(3)
P 		137
B 51.2
(3)
A 		34.7
(-0.9)
A 		25.7
(-3)
A 		41.1
(0.6)
A 		26
C 43.4
(-3)
A 		84.9
(-1)
P 		51.6
(-2.6)
A 		170.9
(3)
P 		128
avr 39.2
(-3) 		65.2
(-1.2) 		48.9
(-2.3) 		124.1
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 77.2
(3)
A 		50.5
(-3)
A 		52
(-2.7)
A 		65.8
(0.4)
M 		53.8
(-2.3)
A 		51.6
(-2.8)
A 		27
B 57.1
(1)
A 		75.1
(3)
P 		30.4
(-2.1)
A 		22.3
(-3)
A 		54.9
(0.7)
P 		53.5
(0.5)
A 		53
C 7.6
(-3)
A 		68.8
(3)
A 		52.5
(1.4)
A 		40.4
(0.2)
A 		31
(-0.7)
A 		59.4
(2.1)
P 		61
avr 47.3
(-1.8) 		64.8
(3) 		45
(-2.4) 		42.8
(-3) 		46.6
(-2) 		54.8
(0.3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 8.4
(-3)
A 		16.5
(0.2)
A 		18.1
(0.9)
A 		23.5
(3)
P 		15
B 16.3
(3)
A 		8.6
(-1.5)
A 		6
(-3)
A 		8.8
(-1.4)
A 		10
C 14.4
(-3)
A 		24.4
(1.2)
P 		18
(-1.5)
A 		28.8
(3)
P 		14
avr 13
(-3) 		16.5
(-0.2) 		14
(-2.2) 		20.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 14.2
(-0.4)
A 		18
(3)
A 		11.3
(-3)
A 		16.7
(1.8)
M 		16.2
(1.4)
A 		12.6
(-1.8)
A 		7
B 19.9
(1.4)
A 		25
(3)
P 		7.4
(-2.5)
A 		5.9
(-3)
A 		22.3
(2.2)
P 		20
(1.4)
A 		19
C 2.8
(-3)
A 		21
(3)
A 		13.4
(0.5)
A 		8.1
(-1.3)
A 		10
(-0.6)
A 		19.9
(2.6)
P 		18
avr 12.3
(-1.9) 		21.3
(3) 		10.7
(-2.7) 		10.2
(-3) 		16.2
(0.2) 		17.5
(0.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180331_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12824
Sequence Type Exemplar sequence
Representative Public ID ZK1037.3 NCBI
Target Description ZK1037.3 /REP_DB=WormBase Gene ID /WP=CE16755 /TR=O45985 /GB=CAB03502.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074395(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074395 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-22) (srt-22) mRNA, complete cds. 11/11 None
GENEFINDER00000019049 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15317254:15318513:-1 11/11 None
ZK1037.3 ENSEMBL cdna:known chromosome:CEL140:V:15317254:15318513:-1 gene:ZK1037.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019037 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15317253-15318513(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srt-22
Ensembl ZK1037.3
Entrez Gene 191498 Entrez gene
SwissProt O45985 EMBL-EBI
WormBase CE16755 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03502 Hypothetical protein ZK1037.3 [Caenorhabditis elegans] ref|NP_506796.1| Serpentine Receptor, class T family member (srt-22) [Caenorhabditis elegans] 0.0
blast AAG24115 Serpentine receptor, class t protein 20 [Caenorhabditis elegans] ref|NP_504180.2| Serpentine Receptor, class T family member (srt-20) [Caenorhabditis elegans] 2.0E-82
blast CAE65426 Hypothetical protein CBG10386 [Caenorhabditis briggsae] 2.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 4.0E-121
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506796.1 7 45-67,80-102,117-139,160-182,209-231,248-270,280-302
ZK1037.3 7 45-67,80-102,117-139,160-182,209-231,248-270,280-302
GENEFINDER00000019049 7 45-67,80-102,117-139,160-182,209-231,248-270,280-302
Sequence
Target Sequence 
>C. ELEGANS:180331_AT
ttgtggttcggatgctccgtatccagcttgacgttagctttgatacgcgttgttgacgta
tgtccacatttgaaacttggaaagctgttcacgagtcgcgcaatttacgcgctttttgga
ctattttgggcttatgcgttgtatgggggagttctgacaaaacctccaatattcaccaca
cattgcatgtcatggttttttgacccggcaattggaaatgatccgaaatattacgtaaat
ctggctcacacgtacaacaatgcattagtgacttgcggcacaactattctatacggttac
ttggcttttttagttataaaaaacaccgactccactttttcgagcaaattttctaattat
caaatcacgatactactccaagcatttttcttttcattttttcatgctgcctccgcagga
ttatatgtttacatgcaatttgtgtcagcatcagaaaatcttgtattgttcacacaattc
gcttggcagtttagtacaggctccgtctgcattgtctacttgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTGGTTCGGATGCTCCGTATCCA 624 703 388 Antisense
AAAGCTGTTCACGAGTCGCGCAATT 94 125 468 Antisense
TACGCGCTTTTTGGACTATTTTGGG 421 649 493 Antisense
AAATCTGGCTCACACGTACAACAAT 358 117 624 Antisense
GACTTGCGGCACAACTATTCTATAC 143 371 657 Antisense
CCGACTCCACTTTTTCGAGCAAATT 158 263 713 Antisense
ATCACGATACTACTCCAAGCATTTT 216 29 751 Antisense
TTCATGCTGCCTCCGCAGGATTATA 675 685 788 Antisense
TGTTCACACAATTCGCTTGGCAGTT 2 561 854 Antisense
TTGGCAGTTTAGTACAGGCTCCGTC 511 705 870 Antisense
CTCCGTCTGCATTGTCTACTTGACT 374 235 888 Antisense
Sequence Source Affymetrix Proprietary Database