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[180330_at]

Description Y44A6D.6 /REP_DB=WormBase Gene ID /WP=CE19163 /TR=Q9XXE1 /GB=CAA19516.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 90      6grp_total > 23      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 225.4
(3)
P 		151.2
(-0.3)
P 		90.1
(-3)
P 		206.9
(2.2)
P 		135
B 272.5
(3)
P 		131
(-0.8)
P 		47
(-3)
P 		162.3
(0.1)
P 		226
C 202.6
(3)
P 		139.3
(-0.4)
P 		90.7
(-3)
P 		202.7
(3)
P 		112
avr 233.5
(3) 		140.5
(-0.5) 		75.9
(-3) 		190.6
(1.4) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 186.6
(1.3)
P 		160.4
(-0.1)
P 		217.1
(3)
P 		118.5
(-2.3)
P 		106.2
(-3)
P 		119.2
(-2.3)
P 		111
B 202.8
(3)
P 		192.1
(2.4)
P 		146
(-0.4)
P 		176
(1.4)
P 		108.6
(-2.7)
P 		103.5
(-3)
P 		99
C 118.5
(-2.1)
P 		200.3
(3)
P 		122
(-1.9)
P 		150.8
(-0.1)
P 		104.6
(-3)
P 		104.4
(-3)
P 		96
avr 169.3
(1.8) 		184.3
(3) 		161.7
(1.3) 		148.4
(0.2) 		106.5
(-3) 		109
(-2.8) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 82.1
(3)
P 		32.8
(-2.1)
P 		23.6
(-3)
P 		30.3
(-2.3)
P 		59
B 86.9
(3)
P 		32.3
(-1.3)
P 		10.9
(-3)
P 		34.6
(-1.1)
P 		76
C 67.1
(3)
P 		40.1
(-1.6)
P 		31.6
(-3)
P 		34.2
(-2.6)
P 		36
avr 78.7
(3) 		35.1
(-1.6) 		22
(-3) 		33
(-1.8) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 34.4
(-1.8)
P 		57
(3)
P 		47.3
(0.9)
P 		30
(-2.8)
P 		32.1
(-2.3)
P 		29
(-3)
P 		28
B 70.6
(3)
P 		63.9
(1.9)
P 		35.5
(-3)
P 		46.6
(-1.1)
P 		44.1
(-1.5)
P 		38.6
(-2.5)
P 		35
C 43.9
(-0.4)
P 		61.1
(3)
P 		31
(-2.9)
P 		30.3
(-3)
P 		33.8
(-2.3)
P 		34.9
(-2.1)
P 		31
avr 49.6
(0.5) 		60.7
(3) 		37.9
(-2.2) 		35.6
(-2.7) 		36.7
(-2.4) 		34.2
(-3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180330_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12668
Sequence Type Exemplar sequence
Representative Public ID Y44A6D.6 NCBI
Target Description Y44A6D.6 /REP_DB=WormBase Gene ID /WP=CE19163 /TR=Q9XXE1 /GB=CAA19516.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075614 NCBI Caenorhabditis elegans Y44A6D.6 (Y44A6D.6) mRNA, complete cds. 11/11 None
Y44A6D.6 ENSEMBL cdna:known chromosome:CEL140:V:20809965:20811491:1 gene:Y44A6D.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040631 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20809964-20811491(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y44A6D.6
Entrez Gene 189902 Entrez gene
SwissProt Q9XXE1 EMBL-EBI
WormBase CE19163 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19516 Hypothetical protein Y44A6D.6 [Caenorhabditis elegans] ref|NP_508015.1| Y44A6D.6 [Caenorhabditis elegans] 1.0E-59
blast CAE61613 Hypothetical protein CBG05535 [Caenorhabditis briggsae] 1.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508015.1 2 9-31,41-63
Y44A6D.6 2 9-31,41-63
Sequence
Target Sequence 
>C. ELEGANS:180330_AT
aatacttccgcatgtcttttggcagtccacttttattgtcatttctgttctttcgattat
tcttctcatggcattggggtttagcggtagaatgctgctaccttctagcatagtcctaag
ctcaatgatggcttctgcaggagcttgcgaaatgtggtggtgtctactgtcaatagctta
ttatcgtcatatttgtgataaaagggatcacccgttctctacatcagtctcaccagatca
ggatccgctttgtgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATACTTCCGCATGTCTTTTGGCAG 96 173 24 Antisense
GGCAGTCCACTTTTATTGTCATTTC 223 537 44 Antisense
TTGTCATTTCTGTTCTTTCGATTAT 571 707 59 Antisense
GATTATTCTTCTCATGGCATTGGGG 591 429 78 Antisense
GCGGTAGAATGCTGCTACCTTCTAG 227 293 107 Antisense
GCTACCTTCTAGCATAGTCCTAAGC 176 303 120 Antisense
AGCTCAATGATGGCTTCTGCAGGAG 675 79 142 Antisense
AATGTGGTGGTGTCTACTGTCAATA 428 161 174 Antisense
AAAAGGGATCACCCGTTCTCTACAT 487 131 223 Antisense
TCTACATCAGTCTCACCAGATCAGG 78 615 241 Antisense
CCAGATCAGGATCCGCTTTGTGCAA 167 273 256 Antisense
Sequence Source Affymetrix Proprietary Database