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[180328_at]

Description F38E11.6 /REP_DB=WormBase Gene ID /WP=CE03298 /TR=Q20169 /GB=CAA92774.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 90      4grp_high_8_8 > 11      6grp_total > 93      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 297
1 2 3 4 range
A 173.4
(0.3)
P 		86.3
(-2.7)
P 		77.3
(-3)
P 		252.3
(3)
P 		175
B 219.5
(3)
P 		83
(-2.2)
A 		61
(-3)
M 		118.9
(-0.8)
P 		159
C 192.4
(-0.4)
P 		118.8
(-1.9)
P 		65.2
(-3)
P 		358.4
(3)
P 		293
avr 195.1
(1.4) 		96
(-2) 		67.8
(-3) 		243.2
(3) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 88
(-3)
P 		125.5
(0.4)
P 		119.3
(-0.2)
P 		91.1
(-2.7)
P 		154.2
(3)
P 		137.3
(1.5)
P 		66
B 90.6
(-2)
P 		138.4
(0)
P 		84.7
(-2.3)
P 		68.3
(-3)
M 		207.9
(3)
P 		113.6
(-1.1)
P 		140
C 120.8
(0.9)
P 		155.4
(2.3)
P 		26
(-3)
A 		172.4
(3)
P 		112.5
(0.5)
P 		80.1
(-0.8)
P 		146
avr 99.8
(-1.3) 		139.8
(1.6) 		76.7
(-3) 		110.6
(-0.5) 		158.2
(3) 		110.3
(-0.5) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 63.1
(3)
P 		18.7
(-3)
P 		20.2
(-2.8)
P 		36.9
(-0.5)
P 		44
B 70
(3)
P 		20.5
(-2.3)
A 		14.1
(-3)
M 		25.3
(-1.8)
P 		56
C 63.7
(3)
P 		34.2
(-1.3)
P 		22.7
(-3)
P 		60.4
(2.5)
P 		41
avr 65.6
(3) 		24.5
(-2.3) 		19
(-3) 		40.9
(-0.2) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 16.2
(-3)
P 		44.6
(2.6)
P 		26
(-1.1)
P 		23.1
(-1.6)
P 		46.5
(3)
P 		33.4
(0.4)
P 		30
B 31.5
(-1.8)
P 		46.1
(-0.5)
P 		20.6
(-2.8)
P 		18.1
(-3)
M 		84.5
(3)
P 		42.4
(-0.8)
P 		66
C 44.8
(2.6)
P 		47.4
(3)
P 		6.6
(-3)
A 		34.7
(1.1)
P 		36.4
(1.4)
P 		26.8
(-0)
P 		41
avr 30.8
(-0.9) 		46
(1.5) 		17.7
(-3) 		25.3
(-1.8) 		55.8
(3) 		34.2
(-0.4) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180328_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9333
Sequence Type Exemplar sequence
Representative Public ID F38E11.6 NCBI
Target Description F38E11.6 /REP_DB=WormBase Gene ID /WP=CE03298 /TR=Q20169 /GB=CAA92774.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028026(11), NM_001028025(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028026 NCBI Caenorhabditis elegans F38E11.6b (F38E11.6) mRNA, complete cds. 11/11 None
NM_001028025 NCBI Caenorhabditis elegans F38E11.6a (F38E11.6) mRNA, complete cds. 11/11 None
F38E11.6b ENSEMBL cdna:known chromosome:CEL140:IV:9463928:9467495:-1 gene:F38E11.6 11/11 None
F38E11.6a ENSEMBL cdna:known chromosome:CEL140:IV:9463934:9467460:-1 gene:F38E11.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022714 7/11 Cross Hyb Matching Probes None
GENEFINDER00000022723 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9464694-9468094(-) 100.0 100.0
Public Domain and Genome References
Ensembl F38E11.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD89740 Hypothetical protein F38E11.6b [Caenorhabditis elegans] ref|NP_001023197.1| F38E11.6b [Caenorhabditis elegans] 0.0
blast CAA92774 Hypothetical protein F38E11.6a [Caenorhabditis elegans] ref|NP_001023196.1| F38E11.6a [Caenorhabditis elegans] 0.0
blast CAE74019 Hypothetical protein CBG21667 [Caenorhabditis briggsae] 1.0E-147
Sequence
Target Sequence 
>C. ELEGANS:180328_AT
acatgtgccgaaccatttcttcaatattttcgtaaatctagtcgagttgtatcaatgtca
ttaacagcagaagccgttccaaatcttgtaaacaccacgagagagacgttattaaaactt
ggatttacaatgacaaggaaagatgatcacattatttgtttcactactgaaacagcacac
gatgacattgatctaacatattacaagttgaagttagtgaatgctggagaattgggtaga
gcaagtgacaatttgactgctcagatctcagctgtataccggtatattgcaagccataac
cgccatgatgataactttttggtagtggttccaagtttcaagaatcaagatgcggagaag
ttcaaacggattaattttatggaaaagaagaaagaggtttatctggatgaatttatcaaa
aataagcaacacgacaaacctccgaaaatgagaactcgaattgcagtcaattgtatttca
tcgtctcgtcaattatttctattctttgaaccatttccaacaagttttgctcaaaatata
tctcttcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATGTGCCGAACCATTTCTTCAAT 492 107 727 Antisense
GAAGCCGTTCCAAATCTTGTAAACA 177 345 796 Antisense
GATCACATTATTTGTTTCACTACTG 485 419 871 Antisense
ACAATTTGACTGCTCAGATCTCAGC 221 115 974 Antisense
AGATCTCAGCTGTATACCGGTATAT 101 67 989 Antisense
TATTGCAAGCCATAACCGCCATGAT 523 665 1011 Antisense
GCAACACGACAAACCTCCGAAAATG 368 317 1152 Antisense
GCAGTCAATTGTATTTCATCGTCTC 39 313 1189 Antisense
TCATCGTCTCGTCAATTATTTCTAT 605 621 1204 Antisense
TTCTATTCTTTGAACCATTTCCAAC 279 691 1223 Antisense
TTTTGCTCAAAATATATCTCTTCTA 69 679 1251 Antisense
Sequence Source Affymetrix Proprietary Database