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[180326_at]

Description Y26D4A.8 /REP_DB=WormBase Gene ID /WP=CE21488 /TR=Q9U2P6 /GB=CAB54348.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 8.3
(-2.6)
A 		12.4
(-2.1)
A 		4.9
(-3)
A 		55.9
(3)
A 		51
B 18
(3)
A 		16
(2)
A 		6.4
(-3)
A 		9.5
(-1.4)
A 		12
C 15.2
(-2.7)
A 		25.7
(-2.1)
A 		10
(-3)
A 		116.7
(3)
A 		107
avr 13.8
(-2.3) 		18
(-1.8) 		7.1
(-3) 		60.7
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 10.7
(-1.4)
A 		12.2
(-1.1)
A 		19.4
(0.4)
A 		2.5
(-3)
A 		9.8
(-1.5)
A 		32.4
(3)
A 		30
B 25.2
(0.9)
A 		22
(0.3)
A 		36.9
(3)
A 		27.4
(1.3)
A 		16.6
(-0.6)
A 		3.3
(-3)
A 		34
C 7.7
(-1.4)
A 		5
(-2.2)
A 		15.4
(0.7)
A 		2.1
(-3)
A 		19.1
(1.8)
A 		23.5
(3)
A 		21
avr 14.5
(-1.3) 		13.1
(-1.9) 		23.9
(3) 		10.7
(-3) 		15.2
(-1) 		19.7
(1.1) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 3
(-1.5)
A 		2.7
(-1.8)
A 		1.3
(-3)
A 		8.2
(3)
A 		7
B 5.7
(3)
A 		4
(0.6)
A 		1.5
(-3)
A 		2
(-2.3)
A 		4
C 5
(-2.4)
A 		7.4
(-1.6)
A 		3.5
(-3)
A 		19.7
(3)
A 		16
avr 4.6
(-1.1) 		4.7
(-1) 		2.1
(-3) 		10
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2
(-1.8)
A 		4.3
(0)
A 		4.2
(-0)
A 		0.6
(-3)
A 		3
(-1)
A 		7.9
(3)
A 		7
B 8.8
(2.8)
A 		7.3
(1.7)
A 		9
(3)
A 		7.3
(1.7)
A 		6.7
(1.2)
A 		1.2
(-3)
A 		8
C 2.9
(-1)
A 		1.5
(-2.1)
A 		3.9
(-0.2)
A 		0.4
(-3)
A 		6.2
(1.6)
A 		7.9
(3)
A 		8
avr 4.6
(0.7) 		4.4
(0.3) 		5.7
(3) 		2.8
(-3) 		5.3
(2.2) 		5.7
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180326_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1955
Sequence Type Exemplar sequence
Representative Public ID Y26D4A.8 NCBI
Target Description Y26D4A.8 /REP_DB=WormBase Gene ID /WP=CE21488 /TR=Q9U2P6 /GB=CAB54348.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060889(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060889 NCBI Caenorhabditis elegans Y26D4A.8 (Y26D4A.8) mRNA, complete cds. 11/11 None
SNAP00000013484 ENSEMBL cdna:SNAP chromosome:CEL140:I:13091440:13092883:-1 10/11 None
GENEFINDER00000013612 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13091440:13097688:-1 11/11 None
Y26D4A.8 ENSEMBL cdna:known chromosome:CEL140:I:13091440:13093153:-1 gene:Y26D4A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13091370-13093084(-) 94.4 100.0
Public Domain and Genome References
Gene Title
Ensembl Y26D4A.8
Entrez Gene 189548 Entrez gene
SwissProt Q9U2P6 EMBL-EBI
WormBase CE21488 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54348 Hypothetical protein Y26D4A.8 [Caenorhabditis elegans] ref|NP_493290.1| Y26D4A.8 [Caenorhabditis elegans] 0.0
blast CAB54347 Hypothetical protein Y26D4A.9 [Caenorhabditis elegans] ref|NP_493291.1| Y26D4A.9 [Caenorhabditis elegans] 0.0
blast CAA22056 Hypothetical protein Y106G6G.5 [Caenorhabditis elegans] ref|NP_492704.1| Y106G6G.5 [Caenorhabditis elegans] 1.0E-165
blast CAB54348 Hypothetical protein Y26D4A.8 [Caenorhabditis elegans] ref|NP_493290.1| Y26D4A.8 [Caenorhabditis elegans] 1.0E-163
blast CAB07171 Hypothetical protein C17H1.7 [Caenorhabditis elegans] ref|NP_493301.1| C17H1.7 [Caenorhabditis elegans] 9.0E-59
blast CAB07171 Hypothetical protein C17H1.7 [Caenorhabditis elegans] ref|NP_493301.1| C17H1.7 [Caenorhabditis elegans] 8.0E-49
blast CAB07170 Hypothetical protein C17H1.6 [Caenorhabditis elegans] ref|NP_493300.1| C17H1.6 [Caenorhabditis elegans] 4.0E-39
Sequence
Target Sequence 
>C. ELEGANS:180326_AT
ttgatacgctggatcgtccggtagctgggttgaaaaaagggattgagaagtcaagggtga
aaggccaactggcggtttgtcagatggttgtggccaagatcactgacagatccgtaaaac
tccaagcagcgtgcgaagcggtattaggtcagcaagaatcccgtcacgaacagattcatg
aactacaaggccacgctcgaagcatccaaaaaatgattgagaccatcaattccagcttga
ctgcgtttagtgaatcactgagcagggatccgattgacaactcgatcgatctcttcaaag
aacttcaaaaacatagccgtatcctgtatgctacagtaaacaagatcccagtagtcagaa
agactaaccatgctctggcatgtgtgaggaaaaccactgaacacttggcttatggttcct
caggaagtgaactattaagtcttgaggcggcagaatcgatacctcaagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGATACGCTGGATCGTCCGGTAGC 266 703 575 Antisense
AAGGCCAACTGGCGGTTTGTCAGAT 345 151 635 Antisense
AACTCCAAGCAGCGTGCGAAGCGGT 85 141 692 Antisense
TCAGCAAGAATCCCGTCACGAACAG 13 625 723 Antisense
ATTCATGAACTACAAGGCCACGCTC 264 9 748 Antisense
GGCCACGCTCGAAGCATCCAAAAAA 23 543 763 Antisense
GACCATCAATTCCAGCTTGACTGCG 470 383 795 Antisense
GCAGGGATCCGATTGACAACTCGAT 464 311 836 Antisense
ATAGCCGTATCCTGTATGCTACAGT 514 19 887 Antisense
ACACTTGGCTTATGGTTCCTCAGGA 305 109 975 Antisense
GCGGCAGAATCGATACCTCAAGAGC 508 291 1021 Antisense
Sequence Source Affymetrix Proprietary Database