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[180324_s_at]

Description C47B2.2A /REP_DB=WormBase Gene ID /WP=CE17562 /TR=O62105 /GB=CAB16859.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 83      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 86      6grp_total > 75      4grp_total > 02      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1622
1 2 3 4 range
A 948
(-3)
P 		1063.1
(-2.6)
P 		999.1
(-2.8)
P 		2570
(3)
P 		1622
B 1006.3
(-2.9)
P 		987.8
(-3)
P 		1014.6
(-2.9)
P 		2492.7
(3)
P 		1505
C 1074.7
(-2.5)
P 		1024.3
(-2.8)
P 		975.9
(-3)
P 		2249.7
(3)
P 		1274
avr 1009.7
(-2.9) 		1025.1
(-2.9) 		996.5
(-3) 		2437.5
(3) 		1441

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 686
1 2 3 4 5 6 range
A 1036.6
(-1.9)
P 		961.7
(-3)
P 		972.2
(-2.8)
P 		1359
(3)
P 		986.9
(-2.6)
P 		1330.9
(2.6)
P 		397
B 673.4
(-3)
P 		850.4
(-0.3)
P 		847.4
(-0.4)
P 		1034.4
(2.5)
P 		947.8
(1.2)
P 		1067.4
(3)
P 		394
C 1132.7
(1.3)
P 		873.6
(-3)
P 		1187.6
(2.2)
P 		1237.3
(3)
P 		1076.8
(0.4)
P 		1011.7
(-0.7)
P 		364
avr 947.6
(-2) 		895.2
(-3) 		1002.4
(-1) 		1210.2
(3) 		1003.8
(-0.9) 		1136.7
(1.6) 		315
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 300
1 2 3 4 range
A 345.2
(1.7)
P 		230.8
(-3)
P 		261.2
(-1.7)
P 		376.2
(3)
P 		145
B 320.9
(-1.3)
P 		244
(-2.8)
P 		235.1
(-3)
P 		531.2
(3)
P 		296
C 355.8
(1.3)
P 		294.5
(-3)
P 		340.1
(0.2)
P 		379.3
(3)
P 		85
avr 340.6
(-0.1) 		256.4
(-3) 		278.8
(-2.2) 		428.9
(3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 191.1
(-3)
P 		342
(2.9)
P 		211.7
(-2.2)
P 		344.7
(3)
P 		297.8
(1.2)
P 		324
(2.2)
P 		154
B 234.3
(-2.1)
P 		283.1
(-0.6)
P 		205.8
(-3)
P 		274
(-0.9)
P 		385.1
(2.6)
P 		398
(3)
P 		192
C 419.8
(3)
P 		266.5
(-2.4)
P 		302.3
(-1.1)
P 		248.8
(-3)
P 		348.4
(0.5)
P 		338.7
(0.2)
P 		171
avr 281.7
(-0.8) 		297.2
(0) 		239.9
(-3) 		289.2
(-0.4) 		343.8
(2.5) 		353.6
(3) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180324_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1729
Sequence Type Exemplar sequence
Representative Public ID C47B2.2A NCBI
Target Description C47B2.2A /REP_DB=WormBase Gene ID /WP=CE17562 /TR=O62105 /GB=CAB16859.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060868(11), NM_060867(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060868 NCBI Caenorhabditis elegans C47B2.2a (C47B2.2) mRNA, complete cds. 11/11 None
NM_060867 NCBI Caenorhabditis elegans C47B2.2b (C47B2.2) mRNA, complete cds. 11/11 None
GENEFINDER00000041244 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12968492:12972690:-1 11/11 None
SNAP00000041227 ENSEMBL cdna:SNAP chromosome:CEL140:I:12970571:12972690:-1 11/11 None
C47B2.2a ENSEMBL cdna:known chromosome:CEL140:I:12969975:12972690:-1 gene:C47B2.2 11/11 None
C47B2.2b.2 ENSEMBL cdna:known chromosome:CEL140:I:12970571:12972692:-1 gene:C47B2.2 11/11 None
C47B2.2b.1 ENSEMBL cdna:known chromosome:CEL140:I:12970571:12972699:-1 gene:C47B2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12970501-12972621(-) 100.0 100.0
Public Domain and Genome References
Ensembl C47B2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16858 Hypothetical protein C47B2.1 [Caenorhabditis elegans] ref|NP_493267.1| C47B2.1 [Caenorhabditis elegans] 0.0
blast CAB16859 Hypothetical protein C47B2.2a [Caenorhabditis elegans] ref|NP_493269.1| C47B2.2a [Caenorhabditis elegans] 1.0E-169
blast CAB54198 Hypothetical protein C47B2.2b [Caenorhabditis elegans] ref|NP_493268.1| C47B2.2b [Caenorhabditis elegans] 1.0E-130
blast CAB54198 Hypothetical protein C47B2.2b [Caenorhabditis elegans] ref|NP_493268.1| C47B2.2b [Caenorhabditis elegans] 1.0E-128
blast CAE63473 Hypothetical protein CBG07940 [Caenorhabditis briggsae] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.7E-19
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.8E-9
Sequence
Target Sequence 
>C. ELEGANS:180324_S_AT
atcactcggatttcgtattcaacgcggatcgtctgatgcggcttgtaattgaagaatgtc
tcaatcatcttccattcactgagcacacagttaccacaccaacaggcttcaaatatgaag
gaattcaatttaatcgtggaaattgtggagtatcgttgtgtagaagtggagaggcgatgg
aagtttcattgagacagtgttgtcggtgtattcgaattggaaaaattctgattggcgacg
aacaaaaagtgctctacgccaggcttcttccggatatcacgtcgcgtcgagttctactgc
tctacccaacgataggatctgggacgacagtttgcaaggcaattgaagtcctaaaagagg
cacgtgtcccagatgagaatatctacttggtttccctattcatctcaccgactggactca
agaatataaccagaaagtacccgtatatcactgtcgtcgcctccgatatcacatctctct
atccaaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACTCGGATTTCGTATTCAACGC 174 29 416 Antisense
AACGCGGATCGTCTGATGCGGCTTG 124 145 436 Antisense
AATCATCTTCCATTCACTGAGCACA 64 169 478 Antisense
ACAAAAAGTGCTCTACGCCAGGCTT 508 109 657 Antisense
ATATCACGTCGCGTCGAGTTCTACT 676 17 689 Antisense
CTACTGCTCTACCCAACGATAGGAT 315 225 709 Antisense
AAAAGAGGCACGTGTCCCAGATGAG 157 133 768 Antisense
TATCTACTTGGTTTCCCTATTCATC 465 659 795 Antisense
TCATCTCACCGACTGGACTCAAGAA 565 621 815 Antisense
AAAGTACCCGTATATCACTGTCGTC 36 121 849 Antisense
GATATCACATCTCTCTATCCAAATC 382 425 880 Antisense
Sequence Source Affymetrix Proprietary Database