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[180323_at]

Description H28O16.2 /REP_DB=WormBase Gene ID /WP=CE18827 /TR=Q9XXK2 /GB=CAA19428.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 56      4grp_high_8_8 > 16      6grp_total > 56      4grp_total > 39      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 180.5
(3)
P 		155.4
(-1.8)
A 		149.4
(-3)
A 		156.9
(-1.6)
A 		31
B 204.7
(3)
P 		118.4
(-2.3)
P 		106.1
(-3)
P 		173.1
(1.1)
P 		99
C 231.9
(3)
P 		166.3
(-2.5)
P 		173.9
(-1.9)
P 		160.4
(-3)
A 		72
avr 205.7
(3) 		146.7
(-2.7) 		143.1
(-3) 		163.5
(-1) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 242.6
(3)
P 		217.3
(0.9)
P 		172.4
(-2.7)
M 		169.1
(-3)
P 		203.3
(-0.2)
P 		210.9
(0.4)
P 		74
B 245.2
(2.2)
P 		225.1
(0.8)
P 		208
(-0.3)
P 		202.3
(-0.7)
P 		169
(-3)
P 		257.2
(3)
P 		88
C 142.6
(-2.9)
P 		214.5
(0.3)
P 		193.7
(-0.6)
P 		164.1
(-1.9)
P 		139.8
(-3)
P 		275.3
(3)
P 		136
avr 210.1
(0.1) 		219
(0.8) 		191.4
(-1.4) 		178.5
(-2.4) 		170.7
(-3) 		247.8
(3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 65.7
(3)
P 		33.7
(-1.5)
A 		39.1
(-0.7)
A 		23
(-3)
A 		43
B 65.3
(3)
P 		29.2
(-2.3)
P 		24.6
(-3)
P 		36.9
(-1.2)
P 		41
C 76.8
(3)
P 		47.8
(-0.5)
P 		60.6
(1)
P 		27
(-3)
A 		50
avr 69.3
(3) 		36.9
(-1.8) 		41.4
(-1.2) 		29
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 44.7
(-1.9)
P 		77.3
(3)
P 		37.5
(-3)
M 		42.9
(-2.2)
P 		61.4
(0.6)
P 		51.3
(-0.9)
P 		40
B 85.3
(1.6)
P 		74.9
(0.2)
P 		50.5
(-3)
P 		53.6
(-2.6)
P 		68.7
(-0.6)
P 		95.9
(3)
P 		45
C 52.8
(-1)
P 		65.5
(0.3)
P 		49.3
(-1.3)
P 		33
(-3)
P 		45.2
(-1.8)
P 		92.2
(3)
P 		59
avr 60.9
(-0.1) 		72.6
(1.8) 		45.8
(-2.6) 		43.2
(-3) 		58.4
(-0.5) 		79.8
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180323_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1412
Sequence Type Exemplar sequence
Representative Public ID H28O16.2 NCBI
Target Description H28O16.2 /REP_DB=WormBase Gene ID /WP=CE18827 /TR=Q9XXK2 /GB=CAA19428.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060800
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000035775 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12657086:12660195:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060800 8/11 Cross Hyb Matching Probes None
SNAP00000035772 7/11 Cross Hyb Matching Probes None
H28O16.2 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12656764-12660126(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19428 Hypothetical protein H28O16.2 [Caenorhabditis elegans] ref|NP_493201.2| H28O16.2 [Caenorhabditis elegans] 0.0
blast CAE64107 Hypothetical protein CBG08716 [Caenorhabditis briggsae] 3.0E-78
Sequence
Target Sequence 
>C. ELEGANS:180323_AT
cacacagttttgacgattctccattttaagaagattttagacggaaatcggtatggaaaa
tcgaaattttccgccaaaatttgccttgcggagctgattgttcagcttggaagcacccaa
aaagctaaaaaatctggcctctttcgacaaaaatatcagattttcaaagaaaaaacgcaa
tccttccacaaatcacgtactccacaagtcctttccgatcattatcgacgtattaaagga
tatcgttcagaacaaggaaataactataattggcaggcattggaagctttaactgatgga
aatactatggattttgacattaatgctccacttcaagccgctcggagtcgatacgcagca
atttcccgtcgtccagctctaagtggaattctcaacagatttaagacaagtggatcagtt
ccagacaacgcaattgctatgataaatggacaatttctacaatatgcaatgactggaaaa
tctgtaacgatgggtagagcttcactaaacgaaaaaatcgatattgatctgtcgaaagag
ggtcccgccacgaaggtactggaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACACAGTTTTGACGATTCTCCATT 341 195 640 Antisense
ATTTGCCTTGCGGAGCTGATTGTTC 500 17 718 Antisense
AAATCTGGCCTCTTTCGACAAAAAT 628 115 769 Antisense
AACGCAATCCTTCCACAAATCACGT 592 145 813 Antisense
AAATCACGTACTCCACAAGTCCTTT 395 117 829 Antisense
CACAAGTCCTTTCCGATCATTATCG 624 193 842 Antisense
TCAAGCCGCTCGGAGTCGATACGCA 468 629 972 Antisense
AGTCGATACGCAGCAATTTCCCGTC 470 61 985 Antisense
CCCGTCGTCCAGCTCTAAGTGGAAT 609 259 1004 Antisense
TGATCTGTCGAAAGAGGGTCCCGCC 679 563 1164 Antisense
GTCCCGCCACGAAGGTACTGGAAGG 61 475 1181 Antisense
Sequence Source Affymetrix Proprietary Database