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[180322_at]

Description W01H2.1 /REP_DB=WormBase Gene ID /WP=CE07560 /TR=O02044 /GB=AAB52887.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 14      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 51.2
(1.9)
P 		29.3
(-1.1)
A 		15.7
(-3)
A 		59.3
(3)
A 		44
B 74
(3)
P 		3.6
(-3)
A 		28.4
(-0.9)
A 		71
(2.7)
P 		70
C 42.7
(-0.8)
P 		44.5
(-0.6)
A 		29.6
(-3)
A 		66.1
(3)
P 		37
avr 56
(1.6) 		25.8
(-2.8) 		24.6
(-3) 		65.5
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 48.7
(3)
A 		47.7
(2.8)
M 		18.3
(-3)
A 		35.4
(0.4)
A 		26
(-1.5)
A 		33.7
(0)
A 		30
B 26.9
(0.4)
A 		15.1
(-1.3)
A 		44.5
(3)
A 		15.1
(-1.3)
A 		3.6
(-3)
A 		13.7
(-1.5)
A 		41
C 63.5
(3)
P 		5.3
(-2.8)
A 		20.4
(-1.3)
A 		3
(-3)
A 		32
(-0.1)
A 		18.6
(-1.5)
A 		61
avr 46.4
(3) 		22.7
(-2) 		27.7
(-0.9) 		17.8
(-3) 		20.5
(-2.4) 		22
(-2.1) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 18.6
(3)
P 		6.4
(-2)
A 		4.1
(-3)
A 		8.7
(-1.1)
A 		15
B 23.6
(3)
P 		0.9
(-3)
A 		6.6
(-1.5)
A 		15.1
(0.8)
P 		23
C 14.1
(3)
P 		12.8
(0.9)
A 		10.3
(-3)
A 		11.1
(-1.7)
P 		4
avr 18.8
(3) 		6.7
(-3) 		7
(-2.9) 		11.6
(-0.6) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 9
(-0.7)
A 		17
(3)
M 		4
(-3)
A 		9
(-0.7)
A 		7.8
(-1.2)
A 		8.2
(-1.1)
A 		13
B 9.3
(2)
A 		5
(-0.7)
A 		10.8
(3)
A 		4
(-1.4)
A 		1.5
(-3)
A 		5.1
(-0.7)
A 		9
C 23.5
(3)
P 		1.6
(-2.7)
A 		5.2
(-1.8)
A 		0.6
(-3)
A 		10.4
(-0.4)
A 		6.2
(-1.5)
A 		23
avr 13.9
(3) 		7.9
(-0.8) 		6.7
(-1.6) 		4.5
(-3) 		6.6
(-1.7) 		6.5
(-1.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180322_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16387
Sequence Type Exemplar sequence
Representative Public ID W01H2.1 NCBI
Target Description W01H2.1 /REP_DB=WormBase Gene ID /WP=CE07560 /TR=O02044 /GB=AAB52887.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171662(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171662 NCBI Caenorhabditis elegans Homeodomain interacting Protein Kinase family member (hpk-1) (hpk-1) mRNA, complete cds. 11/11 A 
SNAP00000010124 ENSEMBL cdna:SNAP chromosome:CEL140:X:4216848:4217033:-1 11/11 None
F20B6.8c.2 ENSEMBL cdna:known chromosome:CEL140:X:4210557:4217264:-1 gene:F20B6.8 11/11 A 
F20B6.8b ENSEMBL cdna:known chromosome:CEL140:X:4210557:4217264:-1 gene:F20B6.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180695 3 1 NM_171662 180322_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4216848-4217034(-) 100.0 100.0
Public Domain and Genome References
Ensembl F20B6.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM54186 Homeodomain interacting protein kinase protein 1, isoform b [Caenorhabditis elegans] ref|NP_741761.1| Homeodomain interacting Protein Kinase family member (hpk-1) [Caenorhabditis elegans] 0.0
blast AAA82316 Homeodomain interacting protein kinase protein 1, isoform a [Caenorhabditis elegans] ref|NP_741762.1| Homeodomain interacting Protein Kinase family member (hpk-1) [Caenorhabditis elegans] 0.0
blast AAM54187 Homeodomain interacting protein kinase protein 1, isoform c [Caenorhabditis elegans] ref|NP_741763.1| Homeodomain interacting Protein Kinase family member (hpk-1) [Caenorhabditis elegans] 0.0
blast T15121 hypothetical protein W01H2.1 - Caenorhabditis elegans 4.0E-28
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 2.0E-17
hanks 3.1.4 CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk4 4.0E-57
hanks 3.1.4 CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk4 3.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 9.4E-61
Pfam IPR000719 EMBL-EBI Protein kinase 9.4E-61
Sequence
Target Sequence 
>C. ELEGANS:180322_AT
atgccaaagcgtaagaactccggacagtcgacggatttgaactcgagatcgccaaagaca
atcgacgaagcgctcaggattctggcaccaccacaagctctccttgtgcagtcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCAAAGCGTAAGAACTCCGGAC 116 41 13 Antisense
AGCGTAAGAACTCCGGACAGTCGAC 382 81 20 Antisense
AGAACTCCGGACAGTCGACGGATTT 72 67 26 Antisense
CCGGACAGTCGACGGATTTGAACTC 693 265 32 Antisense
GACGGATTTGAACTCGAGATCGCCA 565 375 42 Antisense
GAACTCGAGATCGCCAAAGACAATC 261 349 51 Antisense
GATCGCCAAAGACAATCGACGAAGC 183 415 59 Antisense
TCGACGAAGCGCTCAGGATTCTGGC 372 601 74 Antisense
ACGAAGCGCTCAGGATTCTGGCACC 705 91 77 Antisense
CCACCACAAGCTCTCCTTGTGCAGT 367 273 100 Antisense
CCACAAGCTCTCCTTGTGCAGTCGC 131 275 103 Antisense
Sequence Source Affymetrix Proprietary Database