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[180321_at]

Description B0207.2 /REP_DB=WormBase Gene ID /WP=CE07680 /TR=O01431 /GB=AAB52457.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 30      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 102.1
(3)
P 		71.1
(0.6)
A 		25.4
(-3)
A 		72
(0.6)
A 		77
B 89.1
(2.6)
P 		73.1
(1)
A 		33.2
(-3)
A 		92.6
(3)
P 		59
C 142
(3)
P 		42.8
(-2.1)
A 		24.5
(-3)
A 		120.6
(1.9)
P 		118
avr 111.1
(3) 		62.3
(-0.5) 		27.7
(-3) 		95.1
(1.8) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 73.8
(-1.1)
A 		93
(-0.2)
P 		157
(3)
P 		41.2
(-2.8)
A 		58.4
(-1.9)
A 		36.7
(-3)
A 		120
B 128.7
(3)
P 		115.9
(2)
P 		85.6
(-0.2)
P 		55.3
(-2.5)
P 		48.9
(-3)
A 		51.2
(-2.8)
P 		80
C 90.3
(0.4)
P 		121.1
(3)
P 		62.7
(-2)
P 		98.4
(1.1)
P 		72.2
(-1.2)
M 		51.2
(-3)
M 		70
avr 97.6
(1.8) 		110
(3) 		101.8
(2.2) 		65
(-1.2) 		59.8
(-1.7) 		46.4
(-3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 37.2
(3)
P 		15.4
(-1.3)
A 		6.6
(-3)
A 		10.5
(-2.2)
A 		31
B 28.4
(3)
P 		18.1
(0)
A 		7.7
(-3)
A 		19.7
(0.5)
P 		21
C 47
(3)
P 		12.3
(-2.4)
A 		8.5
(-3)
A 		20.3
(-1.2)
P 		39
avr 37.5
(3) 		15.3
(-1.5) 		7.6
(-3) 		16.8
(-1.2) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 13.6
(-1.9)
A 		33.1
(2.7)
P 		34.2
(3)
P 		10.4
(-2.6)
A 		17.6
(-0.9)
A 		8.9
(-3)
A 		25
B 44.8
(3)
P 		38.6
(1.8)
P 		20.8
(-1.8)
P 		14.7
(-3)
P 		19.9
(-2)
A 		19.1
(-2.1)
P 		30
C 33.5
(2)
P 		36.9
(3)
P 		16
(-3)
P 		19.8
(-1.9)
P 		23.4
(-0.9)
M 		17.1
(-2.7)
M 		21
avr 30.6
(1.4) 		36.2
(3) 		23.7
(-0.5) 		15
(-3) 		20.3
(-1.5) 		15
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180321_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1400
Sequence Type Exemplar sequence
Representative Public ID B0207.2 NCBI
Target Description B0207.2 /REP_DB=WormBase Gene ID /WP=CE07680 /TR=O01431 /GB=AAB52457.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059317(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059317 NCBI Caenorhabditis elegans B0207.2 (B0207.2) mRNA, complete cds. 11/11 None
GENEFINDER00000009191 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5963166:5964962:1 11/11 None
SNAP00000009175 ENSEMBL cdna:SNAP chromosome:CEL140:I:5963711:5964962:1 10/11 None
B0207.2 ENSEMBL cdna:known chromosome:CEL140:I:5963166:5965018:1 gene:B0207.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5963225-5964353(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0207.2
Entrez Gene 181835 Entrez gene
SwissProt O01431 EMBL-EBI
WormBase CE30406 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52457 Hypothetical protein B0207.2 [Caenorhabditis elegans] ref|NP_491718.2| B0207.2 [Caenorhabditis elegans] 1.0E-107
blast CAE60427 Hypothetical protein CBG04034 [Caenorhabditis briggsae] 1.0E-106
blast CAE60427 Hypothetical protein CBG04034 [Caenorhabditis briggsae] 1.0E-105
blast AAB52457 Hypothetical protein B0207.2 [Caenorhabditis elegans] ref|NP_491718.2| B0207.2 [Caenorhabditis elegans] 5.0E-94
blast CAE60427 Hypothetical protein CBG04034 [Caenorhabditis briggsae] 2.0E-92
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491718.2 1 13-35
B0207.2 1 13-35
GENEFINDER00000009191 2 2-24,34-56
Sequence
Target Sequence 
>C. ELEGANS:180321_AT
ggaacgatgttggcttgtgcactttgcatagcaaatccaggagcatgtgcaaatccgatg
tggtacacgaatttctgtcttttattacatgattatatgcaagaaatgtatccggttcat
ccagacggaacatcaagtccaaaaatgacaggattacgagctcaaatgcaaaggcatgcg
gcacagagtatggcaacatcagaagatggtacaaggttaacagtcagacaagaatcacgt
gcaactgtagcaatgttggctccggctgttcatattatgcatcaggtatggcgtggtatg
gcatgggta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACGATGTTGGCTTGTGCACTTT 10 531 76 Antisense
GTTGGCTTGTGCACTTTGCATAGCA 118 437 84 Antisense
GGAGCATGTGCAAATCCGATGTGGT 220 521 115 Antisense
GTGGTACACGAATTTCTGTCTTTTA 305 489 135 Antisense
AGAAATGTATCCGGTTCATCCAGAC 645 71 177 Antisense
TCATCCAGACGGAACATCAAGTCCA 709 621 192 Antisense
GGCATGCGGCACAGAGTATGGCAAC 674 519 248 Antisense
GACAAGAATCACGTGCAACTGTAGC 471 365 302 Antisense
ACTGTAGCAATGTTGGCTCCGGCTG 306 97 319 Antisense
GGCTCCGGCTGTTCATATTATGCAT 8 541 333 Antisense
GGTATGGCGTGGTATGGCATGGGTA 541 505 360 Antisense
Sequence Source Affymetrix Proprietary Database