[Home] | [Total List]

[180319_at] 7TM chemoreceptor, srw family

Description K04F1.4 /REP_DB=WormBase Gene ID /WP=CE19955 /TR=Q9TXK7 /GB=AAC78164.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 04      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 61.3
(-2)
A 		52.3
(-2.6)
A 		45.5
(-3)
A 		142.5
(3)
P 		97
B 76.8
(1.2)
P 		59.7
(-0.9)
A 		41.8
(-3)
A 		92.1
(3)
A 		50
C 74.1
(-1.9)
P 		57.2
(-3)
P 		74.3
(-1.9)
M 		149.3
(3)
P 		92
avr 70.7
(-1.6) 		56.4
(-2.8) 		53.9
(-3) 		128
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 71
(2.7)
A 		55.3
(1)
P 		73.5
(3)
A 		59.4
(1.4)
A 		42.8
(-0.4)
A 		19.2
(-3)
A 		54
B 65.8
(2.2)
M 		51.4
(0.9)
P 		74.6
(3)
P 		6.8
(-3)
A 		36.1
(-0.4)
P 		27.4
(-1.2)
A 		68
C 52.6
(1.7)
A 		60.3
(3)
P 		52.9
(1.7)
A 		29.3
(-2.4)
A 		51.4
(1.4)
A 		26
(-3)
A 		34
avr 63.1
(2.5) 		55.7
(1.4) 		67
(3) 		31.8
(-1.9) 		43.4
(-0.3) 		24.2
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 22.3
(3)
A 		11.4
(-3)
A 		11.9
(-2.7)
A 		20.9
(2.2)
P 		11
B 24.5
(3)
P 		14.7
(-1)
A 		9.7
(-3)
A 		19.6
(1)
A 		15
C 24.5
(2.1)
P 		16.4
(-3)
P 		25.9
(3)
M 		25.2
(2.6)
P 		10
avr 23.8
(3) 		14.2
(-3) 		15.8
(-2) 		21.9
(1.8) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 13.1
(0.4)
A 		19.7
(3)
P 		16
(1.5)
A 		15.1
(1.2)
A 		12.9
(0.3)
A 		4.7
(-3)
A 		15
B 22.9
(3)
M 		17.1
(1.4)
P 		18.1
(1.6)
P 		1.8
(-3)
A 		14.7
(0.7)
P 		10.2
(-0.6)
A 		21
C 19.5
(3)
A 		18.4
(2.5)
P 		13.5
(0.4)
A 		5.9
(-3)
A 		16.6
(1.7)
A 		8.7
(-1.8)
A 		14
avr 18.5
(3) 		18.4
(2.9) 		15.9
(1.6) 		7.6
(-3) 		14.7
(0.9) 		7.9
(-2.8) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180319_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15643
Sequence Type Exemplar sequence
Representative Public ID K04F1.4 NCBI
Target Description K04F1.4 /REP_DB=WormBase Gene ID /WP=CE19955 /TR=Q9TXK7 /GB=AAC78164.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071079(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071079 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-91) (srw-91) mRNA, complete cds. 11/11 None
GENEFINDER00000011977 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1678295:1681185:-1 11/11 None
K04F1.4 ENSEMBL cdna:known chromosome:CEL140:V:1679134:1680699:-1 gene:K04F1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1679133-1680819(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-91
Ensembl K04F1.4
Entrez Gene 186991 Entrez gene
SwissProt Q9TXK7 EMBL-EBI
WormBase CE34051 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78164 Serpentine receptor, class w protein 91 [Caenorhabditis elegans] ref|NP_503480.2| Serpentine Receptor, class W family member (srw-91) [Caenorhabditis elegans] 0.0
blast AAC78164 Serpentine receptor, class w protein 91 [Caenorhabditis elegans] ref|NP_503480.2| Serpentine Receptor, class W family member (srw-91) [Caenorhabditis elegans] 1.0E-154
blast CAE62424 Hypothetical protein CBG06514 [Caenorhabditis briggsae] 4.0E-97
blast CAE62424 Hypothetical protein CBG06514 [Caenorhabditis briggsae] 1.0E-88
blast CAB05502 Hypothetical protein F32A7.2 [Caenorhabditis elegans] ref|NP_493589.2| Serpentine Receptor, class W family member (srw-93) [Caenorhabditis elegans] 9.0E-77
blast CAB05502 Hypothetical protein F32A7.2 [Caenorhabditis elegans] ref|NP_493589.2| Serpentine Receptor, class W family member (srw-93) [Caenorhabditis elegans] 2.0E-66
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503480.2 7 34-56,63-85,120-139,160-179,227-249,274-296,311-333
K04F1.4 7 34-56,63-85,120-139,160-179,227-249,274-296,311-333
GENEFINDER00000011977 6 121-143,178-197,218-237,285-307,335-357,372-394
Sequence
Target Sequence 
>C. ELEGANS:180319_AT
gattcaagtcttctgcgtttagtgtttttatcagttcactgatgtcttcttgtttttatc
tttgtataaaatttgtcgaaattggaacttggactcctgcaaattgctgcacaaatattc
cactagactctcaatttccactctacgaacaacgggtttcggatttgttctctctttatg
atggcgcacctgttcagatttttcaatttataaatggaatattttcgaagttgattccat
gtatcatattgcctcttctaactactctactagtcgtggagttgaagcgaaccgagaaga
gtagaatatcttcgagtgtgctttacaagaacaacactgaaaaaactacaaatttagtaa
ttatcatgacattttctattttcttggcctcactgccaaccggtattgccacagtttttc
aggtcatctatagcgatttgggatttttatttatttatatcaatgtggatgcaatctgtg
atactctactgctttggaatgcttctacaaattgtttcatatgctttttaatgtcttccc
agtaccgtaatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCAAGTCTTCTGCGTTTAGTGT 397 429 404 Antisense
AGTTCACTGATGTCTTCTTGTTTTT 374 63 436 Antisense
AACTTGGACTCCTGCAAATTGCTGC 336 139 489 Antisense
ATTCCACTAGACTCTCAATTTCCAC 616 7 520 Antisense
TGTTCTCTCTTTATGATGGCGCACC 281 563 569 Antisense
GATGGCGCACCTGTTCAGATTTTTC 357 405 583 Antisense
TGTATCATATTGCCTCTTCTAACTA 315 559 643 Antisense
ATGACATTTTCTATTTTCTTGGCCT 476 45 769 Antisense
ATTGCCACAGTTTTTCAGGTCATCT 189 7 808 Antisense
AATCTGTGATACTCTACTGCTTTGG 503 169 876 Antisense
TAATGTCTTCCCAGTACCGTAATAC 341 335 932 Antisense
Sequence Source Affymetrix Proprietary Database