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[180318_at]

Description Y17D7C.1 /REP_DB=WormBase Gene ID /WP=CE16596 /TR=O62407 /GB=CAA16295.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 14      4grp_high_8_8 > 20      6grp_total > 15      4grp_total > 36      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 143.6
(-0.5)
P 		211.1
(3)
P 		94.8
(-3)
P 		155.6
(0.1)
P 		116
B 139.5
(3)
P 		120.4
(1)
P 		104.6
(-0.6)
P 		82
(-3)
A 		58
C 155.1
(-0.3)
P 		154
(-0.3)
P 		96.1
(-3)
P 		227
(3)
P 		131
avr 146.1
(1.5) 		161.8
(3) 		98.5
(-3) 		154.9
(2.3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 159.1
(3)
P 		92.2
(0.1)
P 		117
(1.2)
P 		49.8
(-1.7)
A 		84.1
(-0.2)
P 		20.2
(-3)
A 		139
B 132.3
(3)
P 		124
(2.5)
P 		78.3
(-0.5)
P 		80.8
(-0.4)
P 		40.6
(-3)
A 		40.4
(-3)
P 		92
C 97.9
(-0)
P 		160
(3)
P 		61
(-1.9)
P 		62.2
(-1.8)
P 		37.7
(-3)
A 		50.4
(-2.4)
A 		122
avr 129.8
(3) 		125.4
(2.7) 		85.4
(0.1) 		64.3
(-1.2) 		54.1
(-1.9) 		37
(-3) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 52.3
(3)
P 		45.8
(1.7)
P 		24.8
(-2.6)
P 		22.8
(-3)
P 		30
B 44.5
(3)
P 		29.7
(-0.3)
P 		24.2
(-1.5)
P 		17.5
(-3)
A 		27
C 51.4
(3)
P 		44.3
(0.6)
P 		33.5
(-3)
P 		38.3
(-1.4)
P 		18
avr 49.4
(3) 		39.9
(0.5) 		27.5
(-2.7) 		26.2
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 29.3
(2.2)
P 		32.8
(3)
P 		25.5
(1.4)
P 		12.6
(-1.3)
A 		25.4
(1.4)
P 		4.9
(-3)
A 		28
B 46
(3)
P 		41.3
(2.1)
P 		19
(-2.2)
P 		21.4
(-1.8)
P 		16.5
(-2.7)
A 		15.1
(-3)
P 		31
C 36.3
(1)
P 		48.8
(3)
P 		15.5
(-2.5)
P 		12.5
(-3)
P 		12.2
(-3)
A 		16.9
(-2.2)
A 		37
avr 37.2
(2.2) 		41
(3) 		20
(-1.4) 		15.5
(-2.3) 		18
(-1.8) 		12.3
(-3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180318_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14202
Sequence Type Exemplar sequence
Representative Public ID Y17D7C.1 NCBI
Target Description Y17D7C.1 /REP_DB=WormBase Gene ID /WP=CE16596 /TR=O62407 /GB=CAA16295.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075250(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075250 NCBI Caenorhabditis elegans Y17D7C.1 (Y17D7C.1) mRNA, complete cds. 11/11 None
GENEFINDER00000009597 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18710385:18714218:1 11/11 None
Y17D7C.1 ENSEMBL cdna:known chromosome:CEL140:V:18710585:18714218:1 gene:Y17D7C.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009582 2/11 Cross Hyb Matching Probes None
SNAP00000009583 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18710584-18714218(+) 99.04 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17D7C.1
Entrez Gene 189451 Entrez gene
SwissProt O62407 EMBL-EBI
WormBase CE16596 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16295 Hypothetical protein Y17D7C.1 [Caenorhabditis elegans] ref|NP_507651.1| Y17D7C.1 [Caenorhabditis elegans] 1.0E-133
blast CAA16295 Hypothetical protein Y17D7C.1 [Caenorhabditis elegans] ref|NP_507651.1| Y17D7C.1 [Caenorhabditis elegans] 1.0E-100
blast CAB63405 Hypothetical protein Y69H2.8 [Caenorhabditis elegans] ref|NP_507649.1| Y69H2.8 [Caenorhabditis elegans] 8.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507651.1 1 95-117
Y17D7C.1 1 95-117
GENEFINDER00000009597 1 217-234
Sequence
Target Sequence 
>C. ELEGANS:180318_AT
agcagacactcaactggctactggcggtgcagcgcttctacccttctcaagggctacatg
agttcaaaagttacgtcagaacccaaccaaaaattataataaatcagaaatggcaccggc
tgggcgtctgccttgacatctgcgccggtctggtggaaaccctctcccaacacatttgcc
gccatttccttttattctgtcttcaatgtcgcgttgtgtatggtgactttcttctatttt
ttctgattattttaacattttatggacaatcttcgtatcgattttttgagaaatggaatt
cttgccacagaccgttgacgaatagtgtgtgttttacgatattcagagaaaaacgagaga
gtgagagacttggttataaaccagtaaaaatgtcgtacatcgatacttccctggtggagc
cactaaaaaaattggaaataaatctaccaactggcaacaataatgggtacactttgatca
agctgtgcagaacggcttacccgcctacgatcctgcgagaccggcatttctcaacacttg
ttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGACACTCAACTGGCTACTGGC 669 77 110 Antisense
GCTTCTACCCTTCTCAAGGGCTACA 626 301 143 Antisense
ATCAGAAATGGCACCGGCTGGGCGT 300 25 212 Antisense
CATTTCCTTTTATTCTGTCTTCAAT 409 215 292 Antisense
CTGTCTTCAATGTCGCGTTGTGTAT 278 239 306 Antisense
ATGGTGACTTTCTTCTATTTTTTCT 707 49 329 Antisense
TTCTTGCCACAGACCGTTGACGAAT 420 689 408 Antisense
AAATGTCGTACATCGATACTTCCCT 705 119 497 Antisense
ATACTTCCCTGGTGGAGCCACTAAA 143 21 512 Antisense
CAAGCTGTGCAGAACGGCTTACCCG 634 185 588 Antisense
ACCGGCATTTCTCAACACTTGTTGC 189 89 629 Antisense
Sequence Source Affymetrix Proprietary Database