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[180317_at]

Description T05E11.2 /REP_DB=WormBase Gene ID /WP=CE06361 /TR=Q22234 /GB=CAA92972.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 82      6grp_total > 09      4grp_total > 18      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 257
1 2 3 4 range
A 301.4
(-3)
P 		396.4
(2.9)
P 		330.2
(-1.2)
P 		398.2
(3)
P 		97
B 443.8
(-0.3)
P 		370.4
(-3)
P 		374.7
(-2.8)
P 		530.6
(3)
P 		160
C 298.1
(-3)
P 		425
(-0)
P 		339.5
(-2)
P 		555.1
(3)
P 		257
avr 347.8
(-3) 		397.3
(-1) 		348.1
(-3) 		494.6
(3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 484.7
(3)
P 		282
(-3)
P 		310.9
(-2.1)
P 		309.1
(-2.2)
P 		379.4
(-0.1)
P 		358.8
(-0.7)
P 		203
B 387.3
(3)
P 		341.3
(0.4)
P 		286.6
(-2.6)
P 		383.3
(2.8)
P 		280.3
(-3)
P 		374
(2.3)
P 		107
C 357.9
(0.4)
P 		319.4
(-1.1)
P 		299.5
(-1.9)
P 		422.9
(3)
P 		272.4
(-3)
P 		334.8
(-0.5)
P 		151
avr 410
(3) 		314.2
(-2.2) 		299
(-3) 		371.8
(0.9) 		310.7
(-2.4) 		355.9
(0.1) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 109.7
(3)
P 		86.1
(0.2)
P 		86.3
(0.3)
P 		58.3
(-3)
P 		51
B 141.5
(3)
P 		91.5
(-2.5)
P 		86.8
(-3)
P 		113.1
(-0.1)
P 		55
C 98.7
(-1.9)
P 		122.2
(3)
P 		118.3
(2.2)
P 		93.6
(-3)
P 		29
avr 116.6
(3) 		99.9
(-0.5) 		97.1
(-1.1) 		88.3
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 89.4
(-0.2)
P 		100.3
(1.2)
P 		67.7
(-3)
P 		78.4
(-1.6)
P 		114.5
(3)
P 		87.4
(-0.5)
P 		47
B 134.8
(2.6)
P 		113.6
(0.8)
P 		69.6
(-3)
P 		101.5
(-0.3)
P 		113.9
(0.8)
P 		139.5
(3)
P 		70
C 132.7
(3)
P 		97.4
(-0.7)
P 		76.2
(-3)
P 		85
(-2.1)
P 		88.1
(-1.7)
P 		112.1
(0.8)
P 		57
avr 119
(3) 		103.8
(1.1) 		71.2
(-3) 		88.3
(-0.9) 		105.5
(1.3) 		113
(2.2) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180317_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8400
Sequence Type Exemplar sequence
Representative Public ID T05E11.2 NCBI
Target Description T05E11.2 /REP_DB=WormBase Gene ID /WP=CE06361 /TR=Q22234 /GB=CAA92972.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069677(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069677 NCBI Caenorhabditis elegans T05E11.2 (T05E11.2) mRNA, complete cds. 9/11 None
SNAP00000031861 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11115173:11116508:1 9/11 None
GENEFINDER00000031873 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11115173:11116508:1 11/11 None
T05E11.2 ENSEMBL cdna:known chromosome:CEL140:IV:11115254:11116508:1 gene:T05E11.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11115259-11116514(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05E11.2
Entrez Gene 188130 Entrez gene
SwissProt Q22234 EMBL-EBI
WormBase CE35611 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92972 Hypothetical protein T05E11.2 [Caenorhabditis elegans] ref|NP_502078.2| T05E11.2 [Caenorhabditis elegans] 1.0E-111
blast CAA92972 Hypothetical protein T05E11.2 [Caenorhabditis elegans] ref|NP_502078.2| T05E11.2 [Caenorhabditis elegans] 1.0E-107
blast CAE62004 Hypothetical protein CBG06012 [Caenorhabditis briggsae] 1.0E-104
blast CAE62004 Hypothetical protein CBG06012 [Caenorhabditis briggsae] 1.0E-100
blast CAE62004 Hypothetical protein CBG06012 [Caenorhabditis briggsae] 1.0E-92
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502078.2 3 77-99,106-128,160-179
T05E11.2 3 77-99,106-128,160-179
SNAP00000031861 4 7-29,104-126,133-155,187-206
GENEFINDER00000031873 4 7-29,128-150,157-179,211-230
Sequence
Target Sequence 
>C. ELEGANS:180317_AT
gacttgtcatctccgtaactacatcaactctgcacattgtcaagagggtggttctcacac
tcaaccatccagggactgctttggagacagtcttggttttggtagcttgcaatttttaca
aaaaaaaaccatgcaccaatcgttcttaatttgtttagatttcgaattggcatcaattat
tctgatttctgcgtctcttggatgttgtattcttgcaatttgcttcgcgatttgcacaat
tttcacgtcatttggtgcacttgctcatagtgtcgttctgattgcagcagcaatgtgttc
tctatctggatttttgacgtatacctactattacgaattgaaagacaatcaatatgaatt
ggtatccggatatcagtttcagattcattacggttgggcatattatgtttttggtttttc
ttccctcctacagtgggcagctttcgtgtgtagtctgtttggttctgcattcgttctcgt
tcacaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTGTCATCTCCGTAACTACATC 308 371 138 Antisense
AACTACATCAACTCTGCACATTGTC 42 141 154 Antisense
CAAGAGGGTGGTTCTCACACTCAAC 422 183 178 Antisense
ACACTCAACCATCCAGGGACTGCTT 567 107 194 Antisense
GACAGTCTTGGTTTTGGTAGCTTGC 197 369 223 Antisense
AAAACCATGCACCAATCGTTCTTAA 123 131 262 Antisense
ATTTCTGCGTCTCTTGGATGTTGTA 146 15 322 Antisense
TCACGTCATTTGGTGCACTTGCTCA 446 625 380 Antisense
TCCTACAGTGGGCAGCTTTCGTGTG 671 591 563 Antisense
GTGTAGTCTGTTTGGTTCTGCATTC 153 487 585 Antisense
TCTGCATTCGTTCTCGTTCACAAAA 144 609 601 Antisense
Sequence Source Affymetrix Proprietary Database