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[180316_at]

Description Y37H2C.3 /REP_DB=WormBase Gene ID /WP=CE19091 /TR=Q9N609 /GB=CAB76749.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 37      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 5.6
(-1.7)
A 		12.7
(3)
A 		3.7
(-3)
A 		9.1
(0.6)
A 		9
B 27.3
(3)
A 		16
(0.1)
A 		5.6
(-2.6)
A 		4.2
(-3)
A 		23
C 26
(3)
A 		16.6
(0.2)
A 		5.6
(-3)
A 		23.6
(2.3)
A 		20
avr 19.6
(3) 		15.1
(1.2) 		5
(-3) 		12.3
(0) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 37.3
(3)
A 		8
(-2.3)
A 		8.5
(-2.3)
A 		6.8
(-2.6)
A 		4.4
(-3)
A 		21.9
(0.2)
A 		33
B 37
(3)
A 		29.3
(1.7)
A 		26.8
(1.3)
A 		7.3
(-2)
A 		1.7
(-3)
A 		2.2
(-2.9)
A 		35
C 22.5
(-1.5)
A 		43.8
(3)
A 		26.9
(-0.6)
A 		29.9
(0)
A 		15.7
(-3)
A 		19.1
(-2.3)
A 		28
avr 32.3
(3) 		27
(1.7) 		20.7
(0.2) 		14.7
(-1.2) 		7.3
(-3) 		14.4
(-1.3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2
(0.5)
A 		2.7
(3)
A 		1
(-3)
A 		1.3
(-1.9)
A 		2
B 8.7
(3)
A 		4
(-0.6)
A 		1.3
(-2.7)
A 		0.9
(-3)
A 		8
C 8.6
(3)
A 		4.8
(-0.4)
A 		1.9
(-3)
A 		4
(-1.1)
A 		7
avr 6.4
(3) 		3.8
(-0.1) 		1.4
(-3) 		2.1
(-2.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 6.9
(3)
A 		2.8
(-1.4)
A 		1.8
(-2.5)
A 		1.7
(-2.6)
A 		1.3
(-3)
A 		5.3
(1.3)
A 		6
B 12.9
(3)
A 		9.8
(1.5)
A 		6.5
(-0.1)
A 		1.9
(-2.4)
A 		0.7
(-3)
A 		0.8
(-3)
A 		12
C 8.3
(-0.7)
A 		13.4
(3)
A 		6.8
(-1.8)
A 		6
(-2.3)
A 		5.1
(-3)
A 		6.4
(-2.1)
A 		8
avr 9.4
(3) 		8.7
(2.4) 		5
(-0.8) 		3.2
(-2.3) 		2.4
(-3) 		4.2
(-1.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180316_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12798
Sequence Type Exemplar sequence
Representative Public ID Y37H2C.3 NCBI
Target Description Y37H2C.3 /REP_DB=WormBase Gene ID /WP=CE19091 /TR=Q9N609 /GB=CAB76749.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075172(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075172 NCBI Caenorhabditis elegans Y37H2C.3 (Y37H2C.3) mRNA, complete cds. 11/11 None
Y37H2C.3 ENSEMBL cdna:known chromosome:CEL140:V:18269866:18271418:-1 gene:Y37H2C.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18269865-18271418(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37H2C.3
Entrez Gene 189636 Entrez gene
SwissProt Q9N609 EMBL-EBI
WormBase CE19091 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB76724 Hypothetical protein Y37H2C.3 [Caenorhabditis elegans] emb|CAB76749.1| Hypothetical protein Y37H2C.3 [Caenorhabditis elegans] ref|NP_507573.1| Y37H2C.3 [Caenorhabditis elegans] 0.0
blast CAB04503 Hypothetical protein F57G4.4 [Caenorhabditis elegans] ref|NP_507460.1| F57G4.4 [Caenorhabditis elegans] 5.0E-27
blast CAB07206 Hypothetical protein F47H4.7 [Caenorhabditis elegans] ref|NP_507390.1| F47H4.7 [Caenorhabditis elegans] 3.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.5E-24
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.0E-9
Sequence
Target Sequence 
>C. ELEGANS:180316_AT
gacactctggttatcaccgagactcagcaagcctggggtgtacttttcgcgggctccgag
agcattcctatcgagctggcaaaagtgagtccattgttggtcaccagcctgcaattcatc
gacattcgctgtgaggaaatagtttcgatagtacgattaacaaaatctggtactctgaaa
gaagtctcaattaggttcaccaaaccatatcagttcgtacttcgatctcgtccggataca
gtcccacttcagaatattgtggaattggagcaatggaaacatctggaaaagtttgatgtg
ataggcgatatctttatgaacatccctattgatagcttcttgcacttgacaagctgcatc
gtcaggttggttatactgacaacagaggagttgatcaaaattcgagatattctcatggaa
tctagcacatttgaagttgcagttctcaactttatgcattataatttaattgagatcggc
cagtttttcaatccagcctttgatatttcaattgcaccccgaccgattcaatttgggggt
tttcatattgagatcatcgctgttggttcagactgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACTCTGGTTATCACCGAGACTC 15 367 721 Antisense
GAGACTCAGCAAGCCTGGGGTGTAC 703 391 739 Antisense
GGCTCCGAGAGCATTCCTATCGAGC 661 539 772 Antisense
GTGAGTCCATTGTTGGTCACCAGCC 528 483 805 Antisense
AGCCTGCAATTCATCGACATTCGCT 559 81 826 Antisense
TATCAGTTCGTACTTCGATCTCGTC 33 661 928 Antisense
TCCGGATACAGTCCCACTTCAGAAT 305 593 951 Antisense
GACAAGCTGCATCGTCAGGTTGGTT 313 365 1068 Antisense
GATCGGCCAGTTTTTCAATCCAGCC 632 381 1194 Antisense
TTTGATATTTCAATTGCACCCCGAC 690 667 1219 Antisense
GATCATCGCTGTTGGTTCAGACTGT 375 421 1272 Antisense
Sequence Source Affymetrix Proprietary Database