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[180314_at]

Description C47A10.3 /REP_DB=WormBase Gene ID /WP=CE15716 /TR=O45305 /GB=CAB03968.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 26      6grp_cgc > 25      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 22
(-0.2)
A 		2.9
(-3)
A 		43.2
(3)
P 		36.4
(2)
A 		40
B 12.9
(-3)
A 		35.3
(3)
A 		14.6
(-2.5)
A 		31.6
(2)
A 		22
C 26
(-2)
A 		60.3
(3)
P 		19.2
(-3)
A 		46.3
(1)
A 		41
avr 20.3
(-3) 		32.8
(1.2) 		25.7
(-1.2) 		38.1
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 52.3
(3)
A 		22.1
(-0.6)
A 		11.7
(-1.9)
A 		2.2
(-3)
A 		6.2
(-2.5)
A 		34.3
(0.8)
A 		50
B 34.9
(1.2)
A 		37.5
(1.6)
A 		12.2
(-2.4)
A 		46.2
(3)
A 		20.6
(-1.1)
A 		8.7
(-3)
A 		38
C 21.5
(-1.3)
A 		68.6
(3)
A 		43.3
(0.7)
A 		21.1
(-1.4)
A 		3.6
(-3)
A 		35.4
(-0.1)
A 		65
avr 36.2
(1.8) 		42.7
(3) 		22.4
(-0.7) 		23.2
(-0.6) 		10.1
(-3) 		26.1
(-0.1) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 8
(1.1)
A 		0.6
(-3)
A 		11.3
(3)
P 		5.3
(-0.4)
A 		11
B 4.1
(-2.2)
A 		8.7
(3)
A 		3.4
(-3)
A 		6.7
(0.7)
A 		5
C 8.6
(-1.9)
A 		17.3
(3)
P 		6.7
(-3)
A 		7.8
(-2.4)
A 		11
avr 6.9
(-2.2) 		8.9
(3) 		7.1
(-1.7) 		6.6
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 9.6
(3)
A 		7.9
(1.9)
A 		2.5
(-1.7)
A 		0.6
(-3)
A 		1.9
(-2.1)
A 		8.4
(2.2)
A 		9
B 12.2
(2.8)
A 		12.5
(3)
A 		3
(-3)
A 		12.2
(2.8)
A 		8.4
(0.4)
A 		3.2
(-2.9)
A 		10
C 8
(-0.9)
A 		20.9
(3)
A 		11
(-0)
A 		4.2
(-2.1)
A 		1.2
(-3)
A 		11.9
(0.3)
A 		20
avr 9.9
(0.7) 		13.8
(3) 		5.5
(-2) 		5.7
(-1.9) 		3.8
(-3) 		7.8
(-0.6) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180314_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14721
Sequence Type Exemplar sequence
Representative Public ID C47A10.3 NCBI
Target Description C47A10.3 /REP_DB=WormBase Gene ID /WP=CE15716 /TR=O45305 /GB=CAB03968.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075088
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075088 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-284) (srh-284) mRNA, complete cds. A 
C47A10.3 ENSEMBL cdna:known chromosome:CEL140:V:17770125:17772197:1 gene:C47A10.3 A 
GENEFINDER00000022120 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17767656:17772148:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022109 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17770124-17772197(+) 80.12 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-284
Ensembl C47A10.3
Entrez Gene 183528 Entrez gene
SwissProt O45305 EMBL-EBI
WormBase CE35962 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03968 Hypothetical protein C47A10.3 [Caenorhabditis elegans] ref|NP_507489.2| Serpentine Receptor, class H family member (srh-284) [Caenorhabditis elegans] 1.0E-164
blast CAB03967 Hypothetical protein C47A10.2 [Caenorhabditis elegans] ref|NP_507488.1| Serpentine Receptor, class H family member (srh-283) [Caenorhabditis elegans] 1.0E-151
blast CAB03967 Hypothetical protein C47A10.2 [Caenorhabditis elegans] ref|NP_507488.1| Serpentine Receptor, class H family member (srh-283) [Caenorhabditis elegans] 1.0E-127
blast CAB03968 Hypothetical protein C47A10.3 [Caenorhabditis elegans] ref|NP_507489.2| Serpentine Receptor, class H family member (srh-284) [Caenorhabditis elegans] 1.0E-123
blast CAC14401 Hypothetical protein Y59A8A.4 [Caenorhabditis elegans] ref|NP_507505.1| Serpentine Receptor, class H family member (srh-286) [Caenorhabditis elegans] 6.0E-66
blast CAB07355 Hypothetical protein F11A5.2 [Caenorhabditis elegans] ref|NP_507082.2| Serpentine Receptor, class H family member (srh-279) [Caenorhabditis elegans] 1.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.4E-120
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.1E-89
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.9E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507489.2 7 15-36,49-71,91-113,134-153,196-218,239-261,271-293
C47A10.3 7 15-36,49-71,91-113,134-153,196-218,239-261,271-293
GENEFINDER00000022120 11 20-42,55-77,97-119,140-159,196-218,250-272,287-309,330-349,386-408,461-483,493-515
Sequence
Target Sequence 
>C. ELEGANS:180314_AT
gctggtttttgctgggattctgaacgcaagtatgggtgtcgaaatgaggaagagcagtgg
ttcagacagaactatgaagttgcagaaggattttttacgggctttgaagttacagataat
tgagctcaaacatagaaagcaaaatagtatgggaggaggagagacgcaggcggcacgtgc
atctgcaccaggggtgtgcggcaaatctcaaaatttgccgagctcggcaaattcggcaaa
tctgtttttccaatatttgccgagacggcaaattcggcaagtttgccgagctcggcaaat
tcggcaaatttgccgtgcttcactaactccgaaaaatttgatactttttgatattctcat
cccaatagtgatactcattatcccggcaatcattaacacaatattagaagttaacaactt
tcacattcaaggtatcaattgtattatatgctttattttctcagctcacggagcatcttc
cacacttttaatgctttaccttcagaggccttaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGGTTTTTGCTGGGATTCTGAAC 630 293 627 Antisense
GATTCTGAACGCAAGTATGGGTGTC 483 427 642 Antisense
AGGAGGAGAGACGCAGGCGGCACGT 509 55 780 Antisense
CACGTGCATCTGCACCAGGGGTGTG 133 199 800 Antisense
GTTTTTCCAATATTTGCCGAGACGG 278 449 870 Antisense
GCAAATTTGCCGTGCTTCACTAACT 270 317 930 Antisense
GATACTTTTTGATATTCTCATCCCA 19 425 966 Antisense
TTCTCATCCCAATAGTGATACTCAT 150 693 980 Antisense
GATACTCATTATCCCGGCAATCATT 535 423 996 Antisense
TCTTCCACACTTTTAATGCTTTACC 470 617 1102 Antisense
ATGCTTTACCTTCAGAGGCCTTACA 644 41 1117 Antisense
Sequence Source Affymetrix Proprietary Database