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[180313_at] 7TM chemoreceptor, srw family

Description K12D9.5 /REP_DB=WormBase Gene ID /WP=CE12188 /TR=P91380 /GB=AAG24162.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 16      6grp_cgc > 75      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 2.2
(-3)
A 		31.1
(-0.2)
A 		35.9
(0.3)
A 		63.3
(3)
A 		61
B 2.1
(-2.9)
A 		2
(-3)
A 		12.5
(3)
A 		7.3
(0)
A 		11
C 20
(3)
A 		2
(-3)
A 		2.2
(-2.9)
A 		6.7
(-1.4)
A 		18
avr 8.1
(-3) 		11.7
(-1.8) 		16.9
(-0) 		25.8
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 3.2
(-2.5)
A 		6.3
(-1.2)
A 		16.5
(3)
A 		2
(-3)
A 		15.6
(2.6)
A 		10.5
(0.5)
A 		15
B 6.5
(-1.8)
A 		18.8
(0.8)
A 		8.8
(-1.3)
A 		29.2
(3)
A 		0.7
(-3)
A 		2.6
(-2.6)
A 		29
C 1.5
(-2.9)
A 		2.8
(-1.4)
A 		3.7
(-0.3)
A 		1.4
(-3)
A 		5.1
(1.4)
A 		6.5
(3)
A 		5
avr 3.7
(-3) 		9.3
(1.7) 		9.7
(2) 		10.9
(3) 		7.1
(-0.2) 		6.5
(-0.7) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.8
(-3)
A 		6.8
(1.2)
A 		9.4
(3)
A 		9.3
(2.9)
A 		9
B 0.7
(-2.5)
A 		0.5
(-3)
A 		2.9
(3)
A 		1.6
(-0.3)
A 		2
C 6.6
(3)
A 		0.6
(-3)
A 		0.8
(-2.8)
A 		1.1
(-2.5)
A 		6
avr 2.7
(-2.7) 		2.6
(-3) 		4.4
(3) 		4
(1.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.6
(-2.9)
A 		2.2
(-0.6)
A 		3.6
(1.4)
A 		0.5
(-3)
A 		4.7
(3)
A 		2.6
(0)
A 		4
B 2.3
(-1.4)
A 		6.3
(1.9)
A 		2.1
(-1.5)
A 		7.7
(3)
A 		0.3
(-3)
A 		1
(-2.4)
A 		7
C 0.5
(-2.4)
A 		0.9
(-1.1)
A 		0.9
(-1.1)
A 		0.3
(-3)
A 		1.7
(1.4)
A 		2.2
(3)
A 		2
avr 1.1
(-3) 		3.1
(3) 		2.2
(0.3) 		2.8
(2.1) 		2.2
(0.3) 		1.9
(-0.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180313_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15642
Sequence Type Exemplar sequence
Representative Public ID K12D9.5 NCBI
Target Description K12D9.5 /REP_DB=WormBase Gene ID /WP=CE12188 /TR=P91380 /GB=AAG24162.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071415(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071415 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-120) (srw-120) mRNA, complete cds. 11/11 A 
GENEFINDER00000022490 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2994726:3007950:-1 11/11 None
K12D9.5 ENSEMBL cdna:known chromosome:CEL140:V:2994726:2996032:-1 gene:K12D9.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022477 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2994725-2996125(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-120
Ensembl K12D9.5
Entrez Gene 187326 Entrez gene
SwissProt P91380 EMBL-EBI
WormBase CE34345 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24162 Serpentine receptor, class w protein 120 [Caenorhabditis elegans] ref|NP_503816.2| Serpentine Receptor, class W family member (srw-120) [Caenorhabditis elegans] 0.0
blast AAG24164 Serpentine receptor, class w protein 119 [Caenorhabditis elegans] ref|NP_503818.1| Serpentine Receptor, class W family member (srw-119) [Caenorhabditis elegans] 1.0E-172
blast T25822 hypothetical protein K12D9.8 - Caenorhabditis elegans 1.0E-169
blast AAG24164 Serpentine receptor, class w protein 119 [Caenorhabditis elegans] ref|NP_503818.1| Serpentine Receptor, class W family member (srw-119) [Caenorhabditis elegans] 1.0E-168
blast AAN73867 Serpentine receptor, class w protein 117 [Caenorhabditis elegans] ref|NP_503812.1| Serpentine Receptor, class W family member (srw-117) [Caenorhabditis elegans] 1.0E-132
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503816.2 5 38-60,161-178,226-248,272-294,309-331
K12D9.5 5 38-60,161-178,226-248,272-294,309-331
GENEFINDER00000022490 27 36-58,65-84,89-107,134-156,176-198,271-293,298-320,332-349,364-386,399-421,431-448,472-494,509-531,710-727,775-797,823-845,860-882,922-944,954-976,983-1005,1015-1032,1045-1067,1110-1132,1318-1335,1383-1405,1429-1451,1466-1488
Sequence
Target Sequence 
>C. ELEGANS:180313_AT
attacattgttactatgtccgacttattcatgaaaaacaacggttttcttgctaaatatt
tttccttattcaattcttttgtgtcagatataattccatgtctactgctcccgattgtaa
cattattacttattatgaacttgtggaaaaccgctaaaaaaagagcaaatatcacttctg
tgagtaagaacaataattctatgagtaaaactggattagtattctgtgtaactatcacgt
ttttcattgttgaatttccttatggattgagtttggggttcttgtggatgtttgactatg
attcgggcattagtcgcatactgtcctactttggtttcattttctcagtgttaataacct
tgaacacttgcactcatcttttcgtttgcctaatcatatcatctcaataccgaaaaacaa
ccatctacatcttctcctgtggacttattaattcgaaacagacgattgtgagcagaaagg
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTACATTGTTACTATGTCCGACTT 203 13 641 Antisense
ACTATGTCCGACTTATTCATGAAAA 117 103 652 Antisense
CATGAAAAACAACGGTTTTCTTGCT 224 209 669 Antisense
AAAGAGCAAATATCACTTCTGTGAG 490 123 800 Antisense
CATTAGTCGCATACTGTCCTACTTT 674 215 948 Antisense
TCGCATACTGTCCTACTTTGGTTTC 30 601 954 Antisense
TACTGTCCTACTTTGGTTTCATTTT 124 647 959 Antisense
AATACCGAAAAACAACCATCTACAT 182 1 1046 Antisense
TCTACATCTTCTCCTGTGGACTTAT 432 613 1064 Antisense
GTGGACTTATTAATTCGAAACAGAC 329 491 1079 Antisense
ACAGACGATTGTGAGCAGAAAGGTT 610 107 1098 Antisense
Sequence Source Affymetrix Proprietary Database