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[180312_at]

Description F17C11.4 /REP_DB=WormBase Gene ID /WP=CE05651 /TR=Q19515 /GB=CAA96626.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 20      6grp_total > 05      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3466
1 2 3 4 range
A 2207
(-1.6)
P 		1436
(-3)
P 		1444.8
(-3)
P 		4647.6
(3)
P 		3212
B 1668.9
(-2)
P 		1536.1
(-2.3)
P 		1181.8
(-3)
P 		4041.8
(3)
P 		2860
C 1960
(-1.6)
P 		1308.6
(-3)
P 		1331.1
(-3)
P 		4122.9
(3)
P 		2814
avr 1945.3
(-1.7) 		1426.9
(-2.8) 		1319.2
(-3) 		4270.8
(3) 		2952

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 750
1 2 3 4 5 6 range
A 1282.7
(3)
P 		1248.9
(2.6)
P 		819.7
(-2.8)
P 		815.7
(-2.9)
P 		1132.8
(1.1)
P 		805.3
(-3)
P 		477
B 1461.3
(3)
P 		1231.8
(1.2)
P 		711.1
(-3)
P 		934.3
(-1.2)
P 		1245.5
(1.3)
P 		907.5
(-1.4)
P 		750
C 1176.5
(2.1)
P 		1255.5
(3)
P 		893
(-1.3)
P 		789.2
(-2.5)
P 		1025
(0.3)
P 		746.4
(-3)
P 		509
avr 1306.8
(3) 		1245.4
(2.3) 		807.9
(-3) 		846.4
(-2.5) 		1134.4
(0.9) 		819.7
(-2.9) 		499
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 587
1 2 3 4 range
A 803.6
(3)
P 		311.7
(-3)
P 		377.7
(-2.2)
P 		680.3
(1.5)
P 		492
B 532.2
(-0.4)
P 		379.4
(-1.9)
P 		273.9
(-3)
P 		861.3
(3)
P 		587
C 648.8
(2.1)
P 		376.2
(-3)
P 		463.9
(-1.4)
P 		695.2
(3)
P 		319
avr 661.5
(1.7) 		355.8
(-3) 		371.8
(-2.8) 		745.6
(3) 		390

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 350
1 2 3 4 5 6 range
A 236.5
(-1.7)
P 		444.2
(3)
P 		178.5
(-3)
P 		206.9
(-2.4)
P 		341.8
(0.7)
P 		196.1
(-2.6)
P 		266
B 508.5
(3)
P 		410
(1.2)
P 		172.7
(-3)
P 		247.5
(-1.7)
P 		506
(3)
P 		338.4
(-0)
P 		336
C 436.1
(3)
P 		383.1
(1.9)
P 		227.3
(-1.5)
P 		158.7
(-3)
P 		331.7
(0.7)
P 		249.8
(-1)
P 		277
avr 393.7
(2.5) 		412.4
(3) 		192.8
(-3) 		204.4
(-2.7) 		393.2
(2.5) 		261.4
(-1.1) 		220
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180312_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14576
Sequence Type Exemplar sequence
Representative Public ID F17C11.4 NCBI
Target Description F17C11.4 /REP_DB=WormBase Gene ID /WP=CE05651 /TR=Q19515 /GB=CAA96626.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073393(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073393 NCBI Caenorhabditis elegans F17C11.4 (F17C11.4) mRNA, complete cds. 11/11 None
SNAP00000033897 ENSEMBL cdna:SNAP chromosome:CEL140:V:10954672:10955894:1 11/11 None
GENEFINDER00000033906 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10954672:10955894:1 11/11 None
F17C11.4 ENSEMBL cdna:known chromosome:CEL140:V:10954580:10956059:1 gene:F17C11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10954671-10955894(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F17C11.4
Entrez Gene 179518 Entrez gene
SwissProt Q19515 EMBL-EBI
WormBase CE05651 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96626 Hypothetical protein F17C11.4 [Caenorhabditis elegans] ref|NP_505794.1| F17C11.4 [Caenorhabditis elegans] 2.0E-87
blast CAE75131 Hypothetical protein CBG23059 [Caenorhabditis briggsae] 8.0E-81
Sequence
Target Sequence 
>C. ELEGANS:180312_AT
tgcctcgccaacgacgtcaaggaattgtgtatgatgttcgcgagcaaggaactgctcgtc
tgattttcgatgaaaatcggaccaaatttgatggagtcctcgagacgatttctggtgaga
caatgttggtccgtggccgtgtgacgtcaccgactgatctggcaagcacctcggcaacca
ctgatggaagtatcgtaatggatatagatgttgtggatggcgaggaagggtctgcatttc
atgtgactggtgtcaaggttcttgtcgatgagcattatgcggcaatcgattcgacagcca
tcaagtttgaagcacttgatcgtttgattggcatgaaagcagcagtcgaaattcaacaac
acatcagtccagaaattgcctatgattcaaaagaagtttttattgggaaaatgcaaattc
atcttctgacttcgcatcgcccatctccgtcgtctcgccgtgaatctgtttgtgctgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCTCGCCAACGACGTCAAGGAAT 539 585 14 Antisense
GGAACTGCTCGTCTGATTTTCGATG 47 531 61 Antisense
GGAGTCCTCGAGACGATTTCTGGTG 392 517 106 Antisense
GTGAGACAATGTTGGTCCGTGGCCG 423 481 128 Antisense
CCGACTGATCTGGCAAGCACCTCGG 166 263 163 Antisense
CACCTCGGCAACCACTGATGGAAGT 366 201 180 Antisense
GAAGGGTCTGCATTTCATGTGACTG 431 335 238 Antisense
GCGGCAATCGATTCGACAGCCATCA 38 293 292 Antisense
AACACATCAGTCCAGAAATTGCCTA 514 135 371 Antisense
GCAAATTCATCTTCTGACTTCGCAT 687 317 426 Antisense
TCGCCGTGAATCTGTTTGTGCTGAG 95 599 468 Antisense
Sequence Source Affymetrix Proprietary Database