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[180310_s_at]

Description R08C7.2 /REP_DB=WormBase Gene ID /WP=CE07425 /TR=Q21844 /GB=AAC48073.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_highest_8_8 > 52      4grp_high_8_8 > 25      6grp_highest_nonorm > 86      6grp_total > 49      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 707
1 2 3 4 range
A 1169.9
(3)
P 		696.7
(-2.4)
P 		647.6
(-3)
P 		861.3
(-0.5)
P 		522
B 1354.5
(3)
P 		781.6
(-2.7)
P 		752
(-3)
P 		827.8
(-2.2)
P 		603
C 1261.1
(3)
P 		797.8
(-2.2)
P 		721.5
(-3)
P 		976.3
(-0.2)
P 		540
avr 1261.8
(3) 		758.7
(-2.4) 		707
(-3) 		888.5
(-1) 		555

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 616
1 2 3 4 5 6 range
A 1069.6
(1.3)
P 		939
(0)
P 		627.2
(-3)
P 		964.8
(0.3)
P 		977.5
(0.4)
P 		1242.8
(3)
P 		616
B 944.8
(0.9)
P 		782.3
(-1.3)
P 		659.5
(-3)
P 		819.7
(-0.8)
P 		1011.1
(1.8)
P 		1097.5
(3)
P 		438
C 1208.9
(3)
P 		805.9
(-3)
P 		954.1
(-0.8)
P 		924.6
(-1.2)
P 		994.6
(-0.2)
P 		1086.2
(1.2)
P 		403
avr 1074.4
(2) 		842.4
(-1.6) 		746.9
(-3) 		903
(-0.6) 		994.4
(0.8) 		1142.2
(3) 		395
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 306
1 2 3 4 range
A 426
(3)
P 		151.2
(-2.5)
P 		169.3
(-2.1)
P 		126.1
(-3)
P 		300
B 431.9
(3)
P 		193
(-2.6)
P 		174.3
(-3)
P 		176.4
(-3)
P 		258
C 417.5
(3)
P 		229.4
(-1.5)
P 		251.5
(-0.9)
P 		164.6
(-3)
P 		253
avr 425.1
(3) 		191.2
(-2.2) 		198.4
(-2) 		155.7
(-3) 		269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 197.2
(-1.2)
P 		333.9
(3)
P 		136.6
(-3)
P 		244.7
(0.3)
P 		295
(1.8)
P 		302.6
(2)
P 		197
B 328.8
(1)
P 		260.4
(-0.6)
P 		160.1
(-3)
P 		217.1
(-1.6)
P 		410.8
(3)
P 		409.2
(3)
P 		251
C 448.1
(3)
P 		245.9
(-1.6)
P 		242.8
(-1.7)
P 		185.9
(-3)
P 		321.9
(0.1)
P 		363.6
(1.1)
P 		262
avr 324.7
(1.9) 		280.1
(0.4) 		179.8
(-3) 		215.9
(-1.8) 		342.6
(2.5) 		358.5
(3) 		179
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180310_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10532
Sequence Type Exemplar sequence
Representative Public ID R08C7.2 NCBI
Target Description R08C7.2 /REP_DB=WormBase Gene ID /WP=CE07425 /TR=Q21844 /GB=AAC48073.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028161(11), NM_001028162(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028161 NCBI Caenorhabditis elegans R08C7.2a (R08C7.2) mRNA, complete cds. 11/11 None
NM_001028162 NCBI Caenorhabditis elegans R08C7.2b (R08C7.2) mRNA, complete cds. 11/11 None
SNAP00000031362 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4447325:4449649:1 11/11 None
R08C7.2a ENSEMBL cdna:known chromosome:CEL140:IV:4447324:4449872:1 gene:R08C7.2 11/11 None
R08C7.2b ENSEMBL cdna:known chromosome:CEL140:IV:4447325:4449860:1 gene:R08C7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031364 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4447330-4449655(+) 100.0 100.0
Public Domain and Genome References
Ensembl R08C7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48073 Hypothetical protein R08C7.2a [Caenorhabditis elegans] ref|NP_001023332.1| R08C7.2a [Caenorhabditis elegans] 0.0
blast CAE58533 Hypothetical protein CBG01690 [Caenorhabditis briggsae] 1.0E-179
blast AAO91705 Hypothetical protein R08C7.2b [Caenorhabditis elegans] ref|NP_001023333.1| R08C7.2b [Caenorhabditis elegans] 1.0E-125
blast AAC48073 Hypothetical protein R08C7.2a [Caenorhabditis elegans] ref|NP_001023332.1| R08C7.2a [Caenorhabditis elegans] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR005045 EMBL-EBI Eukaryotic protein of unknown function DUF284 1.0E-126
Pfam IPR005045 EMBL-EBI Eukaryotic protein of unknown function DUF284 3.9E-83
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023332.1 2 51-73,307-329
NP_001023333.1 1 51-73
R08C7.2a 2 51-73,307-329
R08C7.2b 1 51-73
SNAP00000031362 2 51-73,307-329
Sequence
Target Sequence 
>C. ELEGANS:180310_S_AT
cattcgacattgaccctgcgacaaagaagccaattgctccatgcggtgcgattgccaatt
cgatattcaacgacactttcacgctggctcatcgtgccgacacaggcatcgttaccatgg
tacccgtgacgactcagggtgtcatctggaatgtggacaaggatcggaaattcaagaatc
ccccgttgaatgatggcaacctctgtgacgcattcaacaataccacgaaaccaccgaatt
ggagcaaaaatccgtgtgaagttggcggttttgagaacgtggatttcattgtttggatgc
gaacggcagctcttccatatttcaaaaagctgtggagaatagtcgaccggaccacgaatc
cattgttttcaaatggactcccccagggaacttatattttgacagtcgagaataactacc
cagttcaatcattcggcggaaagaaagagtttgtgatatcgacaacaagttgggctggag
gcaagaactcattcctcggaatagcctatctcgtcgtcggatccctggccattgtgctcg
gcgtagtcttcatcgtgattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTCGACATTGACCCTGCGACAAA 349 217 440 Antisense
TCCATGCGGTGCGATTGCCAATTCG 687 587 477 Antisense
CTCATCGTGCCGACACAGGCATCGT 615 227 527 Antisense
GCATCGTTACCATGGTACCCGTGAC 149 283 545 Antisense
ACCCGTGACGACTCAGGGTGTCATC 5 83 561 Antisense
GAATGATGGCAACCTCTGTGACGCA 468 331 627 Antisense
GTTTGGATGCGAACGGCAGCTCTTC 240 451 730 Antisense
GAATAGTCGACCGGACCACGAATCC 181 315 776 Antisense
TACCCAGTTCAATCATTCGGCGGAA 390 639 856 Antisense
ATTCCTCGGAATAGCCTATCTCGTC 586 7 930 Antisense
TCGGCGTAGTCTTCATCGTGATTCA 312 607 977 Antisense
Sequence Source Affymetrix Proprietary Database