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[180309_s_at]

Description F49E2.5A /REP_DB=WormBase Gene ID /WP=CE16087 /TR=Q20626 /GB=CAA86428.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 16      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 20      6grp_total > 15      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 773
1 2 3 4 range
A 1412.9
(3)
P
1113.1
(0.2)
P
1051.1
(-0.4)
P
780.3
(-3)
P
633
B 1346.3
(3)
P
1034.1
(-2.4)
P
1041
(-2.3)
P
1002.1
(-3)
P
344
C 1344.8
(3)
P
1062.7
(0.6)
P
963.7
(-0.2)
P
640.1
(-3)
P
705
avr 1368
(3)
1070
(-0.2)
1018.6
(-0.7)
807.5
(-3)
561

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1350
1 2 3 4 5 6 range
A 1806.5
(3)
P
1560.1
(1.7)
P
947.4
(-1.6)
P
674.1
(-3)
P
876.3
(-1.9)
P
927.9
(-1.7)
P
1132
B 1512.9
(3)
P
1513.6
(3)
P
1005.6
(-0.6)
P
894.4
(-1.3)
P
672.5
(-2.9)
P
655.9
(-3)
P
858
C 1952.1
(3)
P
1371.1
(0.4)
P
1202.6
(-0.3)
P
680.2
(-2.7)
P
869.8
(-1.8)
P
602
(-3)
P
1350
avr 1757.2
(3)
1481.6
(1.4)
1051.9
(-1.1)
749.6
(-2.9)
806.2
(-2.5)
728.6
(-3)
1029
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 407
1 2 3 4 range
A 514.4
(3)
P
241.6
(-1.1)
P
274.8
(-0.6)
P
114.2
(-3)
P
400
B 429.3
(3)
P
255.4
(-1.8)
P
241.2
(-2.2)
P
213.5
(-3)
P
216
C 445.2
(3)
P
305.5
(0.5)
P
335.9
(1.1)
P
107.9
(-3)
P
337
avr 463
(3)
267.5
(-0.7)
284
(-0.4)
145.2
(-3)
318

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 587
1 2 3 4 5 6 range
A 333
(-0.5)
P
554.9
(3)
P
206.3
(-2.4)
P
171
(-3)
P
264.4
(-1.5)
P
225.9
(-2.1)
P
384
B 526.4
(3)
P
503.8
(2.5)
P
244.2
(-2.8)
P
236.9
(-3)
P
273.2
(-2.2)
P
244.6
(-2.8)
P
290
C 723.6
(3)
P
418.4
(-0.1)
P
306.1
(-1.3)
P
136.8
(-3)
P
281.5
(-1.5)
P
201.5
(-2.3)
P
587
avr 527.7
(3)
492.4
(2.4)
252.2
(-1.8)
181.6
(-3)
273
(-1.4)
224
(-2.3)
346
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180309_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16357
Sequence Type Exemplar sequence
Representative Public ID F49E2.5A NCBI
Target Description F49E2.5A /REP_DB=WormBase Gene ID /WP=CE16087 /TR=Q20626 /GB=CAA86428.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029524(10), NM_077204(10), NM_001029523(10), NM_077205(10), NM_077207(10), NM_001029522(10), NM_077206(10)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_001029524 NCBI Caenorhabditis elegans F49E2.5j (F49E2.5) mRNA, complete cds. 10/11 None
NM_077204 NCBI Caenorhabditis elegans F49E2.5a (F49E2.5) mRNA, complete cds. 10/11 A 
NM_001029523 NCBI Caenorhabditis elegans F49E2.5i (F49E2.5) mRNA, complete cds. 10/11 None
NM_077205 NCBI Caenorhabditis elegans F49E2.5d (F49E2.5) mRNA, complete cds. 10/11 None
NM_077207 NCBI Caenorhabditis elegans F49E2.5c (F49E2.5) mRNA, complete cds. 10/11 None
NM_001029522 NCBI Caenorhabditis elegans F49E2.5h (F49E2.5) mRNA, complete cds. 10/11 None
NM_077206 NCBI Caenorhabditis elegans F49E2.5b (F49E2.5) mRNA, complete cds. 10/11 None
SNAP00000006377 ENSEMBL cdna:SNAP chromosome:CEL140:X:9552823:9559810:1 10/11 None
GENEFINDER00000006386 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9552823:9559810:1 10/11 None
F49E2.5d.1 ENSEMBL cdna:known chromosome:CEL140:X:9543602:9560729:1 gene:F49E2.5 10/11 A 
F49E2.5d.2 ENSEMBL cdna:known chromosome:CEL140:X:9552773:9560729:1 gene:F49E2.5 10/11 A 
F49E2.5c ENSEMBL cdna:known chromosome:CEL140:X:9552823:9559810:1 gene:F49E2.5 10/11 None
F49E2.5b ENSEMBL cdna:known chromosome:CEL140:X:9552823:9559810:1 gene:F49E2.5 10/11 None
F49E2.5a ENSEMBL cdna:known chromosome:CEL140:X:9552823:9559810:1 gene:F49E2.5 10/11 A 
F49E2.5h ENSEMBL cdna:known chromosome:CEL140:X:9552823:9559810:1 gene:F49E2.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181175 10 7 NM_001029522 180309_s_at (10)
NM_001029523 171758_x_at (9), 172298_x_at (10), 180309_s_at (10)
NM_001029524 171758_x_at (9), 172298_x_at (10), 174674_at (11), 180098_s_at (11), 180309_s_at (10)
NM_077204 171758_x_at (9), 172298_x_at (10), 180309_s_at (10)
NM_077205 180309_s_at (10)
NM_077206 180309_s_at (10)
NM_077207 180309_s_at (10)
NM_077208 171758_x_at (9), 172298_x_at (10), 180098_s_at (11)
NM_077209 171758_x_at (10), 172298_x_at (11), 180098_s_at (11)
NM_171968 171758_x_at (9), 172298_x_at (10), 180098_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9552822-9559832(+) 95.59 100.0
Public Domain and Genome References
Ensembl F49E2.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI79255 Hypothetical protein F49E2.5j [Caenorhabditis elegans] ref|NP_001024695.1| F49E2.5j [Caenorhabditis elegans] 0.0
blast CAA86429 Hypothetical protein F49E2.5b [Caenorhabditis elegans] ref|NP_509607.2| F49E2.5b [Caenorhabditis elegans] 0.0
blast CAH04746 Hypothetical protein F49E2.5h [Caenorhabditis elegans] ref|NP_001024693.1| F49E2.5h [Caenorhabditis elegans] 0.0
blast CAA86428 Hypothetical protein F49E2.5a [Caenorhabditis elegans] ref|NP_509605.2| F49E2.5a [Caenorhabditis elegans] 0.0
blast CAA86424 Hypothetical protein F49E2.5c [Caenorhabditis elegans] ref|NP_509608.2| F49E2.5c [Caenorhabditis elegans] 0.0
blast CAI79254 Hypothetical protein F49E2.5i [Caenorhabditis elegans] ref|NP_001024694.1| F49E2.5i [Caenorhabditis elegans] 0.0
blast CAA86427 Hypothetical protein F49E2.5d [Caenorhabditis elegans] ref|NP_509606.2| F49E2.5d [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.0E-126
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.0E-126
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 2.3E-7
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 9.2E-50
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.0E-126
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 2.3E-7
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 9.2E-50
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.0E-126
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 6.1E-15
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 2.3E-7
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 9.2E-50
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.0E-126
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 9.1E-50
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 3.4E-10
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 7.4E-56
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 6.8E-50
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.0E-126
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.0E-126
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 6.1E-15
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.4E-15
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 2.3E-7
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 4.9E-32
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 9.7E-9
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.4E-15
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 2.3E-7
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 4.9E-32
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 9.7E-9
Sequence
Target Sequence
>C. ELEGANS:180309_S_AT
aactagctcagaacaacactccaacggagttgagaaaaacactacaatcgaaatcactca
agctgttgacggaaccgatatgtcccagactcaattccagaagaatgttgagaaactcgt
tcaggctacgcttgccaagcatgacattgtagaaattgacccaaccgtgaaactgcgcat
cgatgcccaactcatcaagctgtcggagaaaaaggcgcctgctgttgtgatggaacacgt
caactacatcaagccattgccaatggaacttcacgtctctcgaccatcggtaactccaag
ccgcgaccgtgtctacaaacttctgccaaaggatattattttctgtgcaggactcatgga
ctctcacggtgaaaactacgctgtaagaaactttccactcgagctatggctgccgatgaa
cgtaacatcttcaaggacacctcacgcgcacttcaaagaaagatccgcattttcaaggaa
tccccacactacca


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
AACTAGCTCAGAACAACACTCCAAC 150 141 3123 Antisense
GACGGAACCGATATGTCCCAGACTC 702 375 3190 Antisense
GAAACTCGTTCAGGCTACGCTTGCC 442 357 3234 Antisense
TGCCCAACTCATCAAGCTGTCGGAG 466 583 3306 Antisense
AAAAGGCGCCTGCTGTTGTGATGGA 504 131 3332 Antisense
GGAACACGTCAACTACATCAAGCCA 296 529 3354 Antisense
ATTGCCAATGGAACTTCACGTCTCT 190 7 3378 Antisense
CCGTGTCTACAAACTTCTGCCAAAG 394 265 3429 Antisense
TGTGCAGGACTCATGGACTCTCACG 245 557 3466 Antisense
GAAACTTTCCACTCGAGCTATGGCT 67 357 3509 Antisense
TTTTCAAGGAATCCCCACACTACCA 649 673 3592 Antisense
Sequence Source Affymetrix Proprietary Database