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Cluster Members Consensus/Exemplar Group Members |
GeneChip Array Information |
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180309_s_at |
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C. elegans Genome Array |
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Nematode |
Probe Design Information |
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affy.Ce.16357
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Exemplar sequence
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F49E2.5A NCBI
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F49E2.5A /REP_DB=WormBase Gene ID /WP=CE16087 /TR=Q20626 /GB=CAA86428.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
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Annotation Method Description |
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This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s). |
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This is a grade A annotation. |
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NM_001029524(10), NM_077204(10), NM_001029523(10), NM_077205(10), NM_077207(10), NM_001029522(10), NM_077206(10) |
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NM_001029524 NCBI |
Caenorhabditis elegans F49E2.5j (F49E2.5) mRNA, complete cds. |
10/11 |
None |
NM_077204 NCBI |
Caenorhabditis elegans F49E2.5a (F49E2.5) mRNA, complete cds. |
10/11 |
A |
NM_001029523 NCBI |
Caenorhabditis elegans F49E2.5i (F49E2.5) mRNA, complete cds. |
10/11 |
None |
NM_077205 NCBI |
Caenorhabditis elegans F49E2.5d (F49E2.5) mRNA, complete cds. |
10/11 |
None |
NM_077207 NCBI |
Caenorhabditis elegans F49E2.5c (F49E2.5) mRNA, complete cds. |
10/11 |
None |
NM_001029522 NCBI |
Caenorhabditis elegans F49E2.5h (F49E2.5) mRNA, complete cds. |
10/11 |
None |
NM_077206 NCBI |
Caenorhabditis elegans F49E2.5b (F49E2.5) mRNA, complete cds. |
10/11 |
None |
SNAP00000006377 ENSEMBL |
cdna:SNAP chromosome:CEL140:X:9552823:9559810:1 |
10/11 |
None |
GENEFINDER00000006386 ENSEMBL |
cdna:GeneFinder chromosome:CEL140:X:9552823:9559810:1 |
10/11 |
None |
F49E2.5d.1 ENSEMBL |
cdna:known chromosome:CEL140:X:9543602:9560729:1 gene:F49E2.5 |
10/11 |
A |
F49E2.5d.2 ENSEMBL |
cdna:known chromosome:CEL140:X:9552773:9560729:1 gene:F49E2.5 |
10/11 |
A |
F49E2.5c ENSEMBL |
cdna:known chromosome:CEL140:X:9552823:9559810:1 gene:F49E2.5 |
10/11 |
None |
F49E2.5b ENSEMBL |
cdna:known chromosome:CEL140:X:9552823:9559810:1 gene:F49E2.5 |
10/11 |
None |
F49E2.5a ENSEMBL |
cdna:known chromosome:CEL140:X:9552823:9559810:1 gene:F49E2.5 |
10/11 |
A |
F49E2.5h ENSEMBL |
cdna:known chromosome:CEL140:X:9552823:9559810:1 gene:F49E2.5 |
10/11 |
None | |
There are no noteworthy cross hybridizing mRNAs found for this probe set. | |
181175 |
10 |
7 |
NM_001029522 |
180309_s_at (10) |
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NM_001029523 |
171758_x_at (9), 172298_x_at (10), 180309_s_at (10) |
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NM_001029524 |
171758_x_at (9), 172298_x_at (10), 174674_at (11), 180098_s_at (11), 180309_s_at (10) |
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NM_077204 |
171758_x_at (9), 172298_x_at (10), 180309_s_at (10) |
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NM_077205 |
180309_s_at (10) |
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NM_077206 |
180309_s_at (10) |
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NM_077207 |
180309_s_at (10) |
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NM_077208 |
171758_x_at (9), 172298_x_at (10), 180098_s_at (11) |
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NM_077209 |
171758_x_at (10), 172298_x_at (11), 180098_s_at (11) |
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NM_171968 |
171758_x_at (9), 172298_x_at (10), 180098_s_at (11) | |
Genomic Alignment of Consensus/Exemplar Sequence |
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Wormbase March 2004 |
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chrX:9552822-9559832(+) |
95.59 |
100.0 |
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Public Domain and Genome References |
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F49E2.5
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Functional Annotations |
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blast |
CAI79255 |
Hypothetical protein F49E2.5j [Caenorhabditis elegans] ref|NP_001024695.1| F49E2.5j [Caenorhabditis elegans] |
0.0 |
blast |
CAA86429 |
Hypothetical protein F49E2.5b [Caenorhabditis elegans] ref|NP_509607.2| F49E2.5b [Caenorhabditis elegans] |
0.0 |
blast |
CAH04746 |
Hypothetical protein F49E2.5h [Caenorhabditis elegans] ref|NP_001024693.1| F49E2.5h [Caenorhabditis elegans] |
0.0 |
blast |
CAA86428 |
Hypothetical protein F49E2.5a [Caenorhabditis elegans] ref|NP_509605.2| F49E2.5a [Caenorhabditis elegans] |
0.0 |
blast |
CAA86424 |
Hypothetical protein F49E2.5c [Caenorhabditis elegans] ref|NP_509608.2| F49E2.5c [Caenorhabditis elegans] |
0.0 |
blast |
CAI79254 |
Hypothetical protein F49E2.5i [Caenorhabditis elegans] ref|NP_001024694.1| F49E2.5i [Caenorhabditis elegans] |
0.0 |
blast |
CAA86427 |
Hypothetical protein F49E2.5d [Caenorhabditis elegans] ref|NP_509606.2| F49E2.5d [Caenorhabditis elegans] |
0.0 | |
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Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
1.0E-126 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
1.0E-126 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
2.3E-7 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
9.2E-50 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
1.0E-126 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
2.3E-7 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
9.2E-50 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
1.0E-126 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
6.1E-15 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
2.3E-7 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
9.2E-50 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
1.0E-126 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
9.1E-50 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
3.4E-10 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
7.4E-56 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
6.8E-50 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
1.0E-126 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
1.0E-126 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
6.1E-15 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
1.4E-15 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
2.3E-7 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
4.9E-32 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
9.7E-9 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
1.4E-15 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
2.3E-7 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
4.9E-32 |
Pfam |
IPR006836 EMBL-EBI |
Protein of unknown function DUF612 |
9.7E-9 | |
Sequence |
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>C. ELEGANS:180309_S_AT
aactagctcagaacaacactccaacggagttgagaaaaacactacaatcgaaatcactca
agctgttgacggaaccgatatgtcccagactcaattccagaagaatgttgagaaactcgt
tcaggctacgcttgccaagcatgacattgtagaaattgacccaaccgtgaaactgcgcat
cgatgcccaactcatcaagctgtcggagaaaaaggcgcctgctgttgtgatggaacacgt
caactacatcaagccattgccaatggaacttcacgtctctcgaccatcggtaactccaag
ccgcgaccgtgtctacaaacttctgccaaaggatattattttctgtgcaggactcatgga
ctctcacggtgaaaactacgctgtaagaaactttccactcgagctatggctgccgatgaa
cgtaacatcttcaaggacacctcacgcgcacttcaaagaaagatccgcattttcaaggaa
tccccacactacca
BLASTn GenBank NR |
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AACTAGCTCAGAACAACACTCCAAC |
150 |
141 |
3123 |
Antisense |
GACGGAACCGATATGTCCCAGACTC |
702 |
375 |
3190 |
Antisense |
GAAACTCGTTCAGGCTACGCTTGCC |
442 |
357 |
3234 |
Antisense |
TGCCCAACTCATCAAGCTGTCGGAG |
466 |
583 |
3306 |
Antisense |
AAAAGGCGCCTGCTGTTGTGATGGA |
504 |
131 |
3332 |
Antisense |
GGAACACGTCAACTACATCAAGCCA |
296 |
529 |
3354 |
Antisense |
ATTGCCAATGGAACTTCACGTCTCT |
190 |
7 |
3378 |
Antisense |
CCGTGTCTACAAACTTCTGCCAAAG |
394 |
265 |
3429 |
Antisense |
TGTGCAGGACTCATGGACTCTCACG |
245 |
557 |
3466 |
Antisense |
GAAACTTTCCACTCGAGCTATGGCT |
67 |
357 |
3509 |
Antisense |
TTTTCAAGGAATCCCCACACTACCA |
649 |
673 |
3592 |
Antisense | |
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Affymetrix Proprietary Database |