[Home] | [Total List]

[180308_at]

Description C18E3.1 /REP_DB=WormBase Gene ID /WP=CE27712 /TR=O02102 /GB=AAB52949.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 40.8
(-2.1)
A 		45.5
(-1.9)
A 		25.6
(-3)
A 		129.6
(3)
A 		104
B 54.3
(0.1)
A 		48.1
(-1)
A 		37.2
(-3)
A 		70.6
(3)
A 		33
C 37.1
(-1.8)
A 		53.7
(-0.5)
A 		22.3
(-3)
A 		96.9
(3)
A 		75
avr 44.1
(-1.7) 		49.1
(-1.2) 		28.4
(-3) 		99
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 32.8
(-2.3)
A 		17.4
(-3)
A 		45.3
(-1.7)
A 		38.2
(-2)
A 		106
(1.1)
P 		147.4
(3)
P 		130
B 36.2
(-2.5)
A 		38.2
(-2.4)
A 		28.3
(-3)
A 		34.2
(-2.6)
A 		98.8
(1.3)
M 		125.8
(3)
P 		98
C 39.6
(-2.1)
A 		31.5
(-2.6)
A 		56.7
(-1.2)
A 		23.5
(-3)
A 		79.1
(0.1)
M 		132.2
(3)
P 		109
avr 36.2
(-2.6) 		29
(-3) 		43.4
(-2.2) 		32
(-2.8) 		94.6
(0.7) 		135.1
(3) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 14.8
(1)
A 		9.9
(-1.4)
A 		6.7
(-3)
A 		19
(3)
A 		12
B 17.3
(3)
A 		11.9
(-0.7)
A 		8.6
(-3)
A 		15
(1.4)
A 		9
C 12.3
(0.2)
A 		15.4
(2.4)
A 		7.8
(-3)
A 		16.3
(3)
A 		9
avr 14.8
(1.7) 		12.4
(0.1) 		7.7
(-3) 		16.8
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 6
(-3)
A 		6.2
(-3)
A 		9.9
(-2.2)
A 		9.7
(-2.3)
A 		32
(2.2)
P 		35.9
(3)
P 		30
B 12.6
(-2.1)
A 		12.7
(-2.1)
A 		6.9
(-3)
A 		9.1
(-2.7)
A 		40.1
(2)
M 		46.9
(3)
P 		40
C 14.7
(-1.5)
A 		9.6
(-2.3)
A 		14.4
(-1.5)
A 		4.7
(-3)
A 		25.6
(0.2)
M 		44.3
(3)
P 		40
avr 11.1
(-2.4) 		9.5
(-2.7) 		10.4
(-2.5) 		7.8
(-3) 		32.6
(1.3) 		42.4
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180308_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1475
Sequence Type Exemplar sequence
Representative Public ID C18E3.1 NCBI
Target Description C18E3.1 /REP_DB=WormBase Gene ID /WP=CE27712 /TR=O02102 /GB=AAB52949.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058929(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058929 NCBI Caenorhabditis elegans C18E3.1 (C18E3.1) mRNA, complete cds. 11/11 None
SNAP00000003660 ENSEMBL cdna:SNAP chromosome:CEL140:I:4212744:4214263:1 11/11 None
GENEFINDER00000003666 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4212744:4214263:1 11/11 None
C18E3.1 ENSEMBL cdna:known chromosome:CEL140:I:4212744:4214263:1 gene:C18E3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4212743-4214263(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18E3.1
Entrez Gene 172019 Entrez gene
SwissProt O02102 EMBL-EBI
WormBase CE27712 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52949 Hypothetical protein C18E3.1 [Caenorhabditis elegans] ref|NP_491330.1| C18E3.1 [Caenorhabditis elegans] 0.0
blast T15186 hypothetical protein C18E3.1 - Caenorhabditis elegans 0.0
blast CAE66811 Hypothetical protein CBG12175 [Caenorhabditis briggsae] 1.0E-119
Sequence
Target Sequence 
>C. ELEGANS:180308_AT
aaaatgtgctgatcttcgcttcaccactgtcctatgtgcgatttgttgctcgccccgatc
cacagagaacaaatcaatcagttttcgaagatccatctgaaacggttcggcttatgatgg
ctcctgacgtggcaaaagtcgctcagaaaatgcttcccaaatggcaaactgtcactttca
cattggcattcggaaagcatgtggctgtgaagtaccggatcattgaagttcgcaagcaac
ctgtcacctacgtcaaagctaaagctgatcgtgtgaagcgcgtgtcgacaagtactcttt
accgtaccgagccagtgcagagagtcgactattggcgcagtttcaagtcaaatgagctga
agctctcgactgttgagaagaatgatccgcaaatagtgaaacgtgtgtttctcgagcaac
aaagtttgaattgggacccttctggagttattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATGTGCTGATCTTCGCTTCACC 323 133 494 Antisense
TTCACCACTGTCCTATGTGCGATTT 14 687 513 Antisense
AACGGTTCGGCTTATGATGGCTCCT 14 145 594 Antisense
TGATGGCTCCTGACGTGGCAAAAGT 345 567 608 Antisense
GGCAAACTGTCACTTTCACATTGGC 48 533 656 Antisense
GATCGTGTGAAGCGCGTGTCGACAA 607 417 760 Antisense
GTGTCGACAAGTACTCTTTACCGTA 513 485 775 Antisense
ACCGTACCGAGCCAGTGCAGAGAGT 454 89 794 Antisense
GAGAGTCGACTATTGGCGCAGTTTC 159 395 813 Antisense
TGAGCTGAAGCTCTCGACTGTTGAG 163 569 846 Antisense
AATTGGGACCCTTCTGGAGTTATTG 209 177 922 Antisense
Sequence Source Affymetrix Proprietary Database