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[180303_at]

Description C49C8.2 /REP_DB=WormBase Gene ID /WP=CE08837 /TR=Q18706 /GB=AAB03127.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 02      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 5.3
(-2.7)
A 		2.3
(-3)
A 		10.6
(-2.2)
A 		68.5
(3)
A 		66
B 2.4
(-3)
A 		4
(-2.9)
A 		5.8
(-2.8)
A 		127.3
(3)
A 		125
C 14.5
(-2.3)
A 		7.4
(-2.7)
A 		2.9
(-3)
A 		99.2
(3)
A 		96
avr 7.4
(-2.8) 		4.6
(-3) 		6.4
(-2.9) 		98.3
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 23.8
(3)
A 		19.4
(1.8)
A 		10.1
(-0.8)
A 		20.5
(2.1)
A 		19.5
(1.8)
A 		2.2
(-3)
A 		22
B 27.4
(-0.8)
A 		6.6
(-3)
A 		8.1
(-2.8)
A 		7.7
(-2.9)
A 		62.8
(3)
A 		45.9
(1.2)
A 		56
C 9.7
(-2.9)
A 		8.7
(-3)
A 		11.5
(-2.8)
A 		81
(3)
A 		50.7
(0.5)
A 		39.6
(-0.4)
A 		72
avr 20.3
(-1.2) 		11.6
(-2.7) 		9.9
(-3) 		36.4
(1.6) 		44.3
(3) 		29.2
(0.4) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 1.9
(-2.1)
A 		0.5
(-3)
A 		2.8
(-1.5)
A 		10
(3)
A 		10
B 0.8
(-3)
A 		1
(-3)
A 		1.3
(-2.9)
A 		27.1
(3)
A 		26
C 4.8
(-1.5)
A 		2.1
(-2.6)
A 		1
(-3)
A 		16.7
(3)
A 		16
avr 2.5
(-2.5) 		1.2
(-3) 		1.7
(-2.8) 		17.9
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 4.4
(0.7)
A 		6.9
(3)
A 		2.2
(-1.4)
A 		5.2
(1.4)
A 		5.9
(2.1)
A 		0.5
(-3)
A 		6
B 9.5
(-1.1)
A 		2.2
(-2.9)
A 		2
(-3)
A 		2
(-3)
A 		25.5
(3)
A 		17.1
(0.9)
A 		24
C 3.6
(-2.6)
A 		2.6
(-3)
A 		2.9
(-2.9)
A 		16.3
(3)
A 		16.4
(3)
A 		13.3
(1.7)
A 		14
avr 5.8
(-1.5) 		3.9
(-2.3) 		2.4
(-3) 		7.8
(-0.6) 		15.9
(3) 		10.3
(0.5) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180303_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10067
Sequence Type Exemplar sequence
Representative Public ID C49C8.2 NCBI
Target Description C49C8.2 /REP_DB=WormBase Gene ID /WP=CE08837 /TR=Q18706 /GB=AAB03127.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069081
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000039874 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8652117:8652850:1 11/11 None
GENEFINDER00000039880 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8651078:8652850:1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8651083-8652856(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03127 Hypothetical protein C49C8.2 [Caenorhabditis elegans] ref|NP_501482.2| C49C8.2 [Caenorhabditis elegans] 1.0E-80
blast CAE56697 Hypothetical protein CBG24479 [Caenorhabditis briggsae] 3.0E-56
blast AAB03127 Hypothetical protein C49C8.2 [Caenorhabditis elegans] ref|NP_501482.2| C49C8.2 [Caenorhabditis elegans] 9.0E-30
blast CAE56697 Hypothetical protein CBG24479 [Caenorhabditis briggsae] 5.0E-28
blast CAE56698 Hypothetical protein CBG24480 [Caenorhabditis briggsae] 2.0E-10
blast CAE56698 Hypothetical protein CBG24480 [Caenorhabditis briggsae] 8.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000039880 3 114-136,171-193,315-337
Sequence
Target Sequence 
>C. ELEGANS:180303_AT
gcgagacacaagattcctgagagacttcagaaagtggtttcacttttgactatccgacat
gatcacaattttaatacagcagaaagcacatcaaaaagcttatcttactatgtccacccg
tgctccttaaacagttcgggccctgaatacaatctattcagttgcttgagatacaagagt
aaatggacactaaaactaaaagctggttgtgctgccggagcagttgcgggagttttggta
cctggagttgcaccagtggctggagaagttttcgtcaaagttcgcaatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAGACACAAGATTCCTGAGAGAC 57 291 751 Antisense
GTTTCACTTTTGACTATCCGACATG 691 449 787 Antisense
AAAGCTTATCTTACTATGTCCACCC 196 125 845 Antisense
CACCCGTGCTCCTTAAACAGTTCGG 487 199 865 Antisense
ACAGTTCGGGCCCTGAATACAATCT 501 105 881 Antisense
TAAAAGCTGGTTGTGCTGCCGGAGC 669 639 947 Antisense
GCTGCCGGAGCAGTTGCGGGAGTTT 513 293 961 Antisense
GTTGCGGGAGTTTTGGTACCTGGAG 700 431 973 Antisense
GGTACCTGGAGTTGCACCAGTGGCT 307 505 987 Antisense
ACCAGTGGCTGGAGAAGTTTTCGTC 491 85 1002 Antisense
AGTTTTCGTCAAAGTTCGCAATCAT 253 63 1017 Antisense
Sequence Source Affymetrix Proprietary Database