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[180301_s_at]

Description C44C8.1 /REP_DB=WormBase Gene ID /WP=CE17541 /TR=Q9TZ18 /GB=AAC68939.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 1.6
(-3)
A 		3.6
(-2.8)
A 		22.3
(-1)
A 		64.3
(3)
A 		63
B 32.1
(3)
A 		6.3
(-2.4)
A 		3.5
(-3)
A 		27.4
(2)
A 		29
C 2.3
(-3)
A 		7
(-2.8)
A 		7.5
(-2.7)
A 		123.1
(3)
A 		121
avr 12
(-2.4) 		5.6
(-3) 		11.1
(-2.5) 		71.6
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 2.4
(-3)
A 		51.1
(1)
A 		25.5
(-1.1)
A 		12.1
(-2.2)
A 		3.4
(-2.9)
A 		76
(3)
P 		74
B 6
(-3)
A 		6.4
(-3)
A 		34.4
(-0.2)
A 		17.3
(-1.9)
A 		13.7
(-2.2)
A 		66.8
(3)
P 		61
C 4.5
(-2.7)
A 		11.6
(-1.8)
A 		21.2
(-0.6)
A 		6.4
(-2.5)
A 		2.5
(-3)
A 		49.6
(3)
P 		47
avr 4.3
(-3) 		23
(-1.1) 		27
(-0.7) 		11.9
(-2.2) 		6.5
(-2.8) 		64.1
(3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 0.6
(-3)
A 		0.8
(-2.9)
A 		5.8
(0.5)
A 		9.4
(3)
A 		9
B 10.2
(3)
A 		1.6
(-2.5)
A 		0.8
(-3)
A 		5.8
(0.2)
A 		9
C 0.8
(-3)
A 		2
(-2.6)
A 		2.6
(-2.5)
A 		20.8
(3)
A 		20
avr 3.9
(-1.6) 		1.5
(-3) 		3.1
(-2.1) 		12
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 0.4
(-3)
A 		18.2
(2.9)
A 		5.6
(-1.3)
A 		3.1
(-2.1)
A 		1
(-2.8)
A 		18.5
(3)
P 		18
B 2.1
(-3)
A 		2.1
(-3)
A 		8.3
(-1.4)
A 		4.6
(-2.3)
A 		5.6
(-2.1)
A 		24.9
(3)
P 		23
C 1.7
(-2.7)
A 		3.5
(-2)
A 		5.4
(-1.3)
A 		1.3
(-2.8)
A 		0.8
(-3)
A 		16.6
(3)
P 		16
avr 1.4
(-3) 		7.9
(-0.9) 		6.4
(-1.4) 		3
(-2.5) 		2.5
(-2.6) 		20
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180301_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10371
Sequence Type Exemplar sequence
Representative Public ID C44C8.1 NCBI
Target Description C44C8.1 /REP_DB=WormBase Gene ID /WP=CE17541 /TR=Q9TZ18 /GB=AAC68939.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067611(11), NM_067609(11), NM_067608(11), NM_067607(11), NM_067606(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067611 NCBI Caenorhabditis elegans F58H7.7 (F58H7.7) mRNA, complete cds. 11/11 A 
NM_067609 NCBI Caenorhabditis elegans C44C8.1 (C44C8.1) mRNA, complete cds. 11/11 A 
NM_067608 NCBI Caenorhabditis elegans C44C8.2 (C44C8.2) mRNA, complete cds. 11/11 A 
NM_067607 NCBI Caenorhabditis elegans C44C8.3 (C44C8.3) mRNA, complete cds. 11/11 A 
NM_067606 NCBI Caenorhabditis elegans C44C8.4 (C44C8.4) mRNA, complete cds. 11/11 A 
SNAP00000021737 ENSEMBL cdna:SNAP chromosome:CEL140:IV:892806:894586:1 11/11 None
SNAP00000021740 ENSEMBL cdna:SNAP chromosome:CEL140:IV:896958:898739:1 11/11 None
SNAP00000021744 ENSEMBL cdna:SNAP chromosome:CEL140:IV:901110:902891:1 11/11 None
GENEFINDER00000021753 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:905263:906033:1 11/11 None
GENEFINDER00000021756 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:896958:900918:1 11/11 None
GENEFINDER00000021758 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:901110:905071:1 11/11 None
GENEFINDER00000021759 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:892806:896766:1 11/11 None
SNAP00000022279 ENSEMBL cdna:SNAP chromosome:CEL140:IV:909415:912360:1 11/11 None
GENEFINDER00000022294 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:909415:913536:1 11/11 None
C44C8.4 ENSEMBL cdna:known chromosome:CEL140:IV:891239:894586:1 gene:C44C8.4 11/11 A 
C44C8.3 ENSEMBL cdna:known chromosome:CEL140:IV:895391:898739:1 gene:C44C8.3 11/11 A 
C44C8.2 ENSEMBL cdna:known chromosome:CEL140:IV:899543:902891:1 gene:C44C8.2 11/11 A 
C44C8.1 ENSEMBL cdna:known chromosome:CEL140:IV:903696:906048:1 gene:C44C8.1 11/11 A 
F58H7.7 ENSEMBL cdna:known chromosome:CEL140:IV:909415:913147:1 gene:F58H7.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:903701-906054(+) 100.0 100.0
chrIV:891244-893597(+) 99.94 99.94
chrIV:895396-897749(+) 99.83 99.83
chrIV:899548-901901(+) 99.83 99.83
chrIV:907853-910206(+) 99.83 99.83
Public Domain and Genome References
Gene Title




Ensembl C44C8.4
C44C8.3
C44C8.2
C44C8.1
F58H7.7
Entrez Gene 183447 Entrez gene
183448 Entrez gene
183449 Entrez gene
183450 Entrez gene
186554 Entrez gene
SwissProt Q9TZ18 EMBL-EBI
Q9TW90 EMBL-EBI
Q9TZ17 EMBL-EBI
O45093 EMBL-EBI
WormBase CE17541 Wormbase
CE17542 Wormbase
CE17542 Wormbase
CE17543 Wormbase
CE34326 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC02596 Hypothetical protein F58H7.7 [Caenorhabditis elegans] ref|NP_500012.2| F58H7.7 [Caenorhabditis elegans] 0.0
blast AAC68942 Hypothetical protein C44C8.4 [Caenorhabditis elegans] ref|NP_500007.1| C44C8.4 [Caenorhabditis elegans] 0.0
blast AAC68940 Hypothetical protein C44C8.3 [Caenorhabditis elegans] gb|AAC68941.1| Hypothetical protein C44C8.2 [Caenorhabditis elegans] ref|NP_500008.1| C44C8.3 [Caenorhabditis elegans] ref|NP_500009.1| C44C8.2 [Caenorhabditis elegans] 0.0
blast AAC68939 Hypothetical protein C44C8.1 [Caenorhabditis elegans] ref|NP_500010.1| C44C8.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.2E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.2E-4
Sequence
Target Sequence 
>C. ELEGANS:180301_S_AT
caaaatttctatgtcgtgtccttcgattcgaaaactagaaaaatcgattactttgtacgt
aaagtgtctgaaattaactgattattatgttacggtaaaccaggacacctatcaattaaa
tgttgctaatcgaaagaaggattttcaatttgatatcgacccaacaaatcaccctgatgc
cagtgagatagagcaagatccaaatgaaatactaattgacaacgtgagaagatatcgggc
accagaacacgagggggaaccaacagaactttcaagattgatggaagagatacatgcgac
tggtcttaagctcgatcaacatgtgggaaaactttttcgcttacttaatggcgaaaatgt
cattcgtctgaaaatgggtggaagggttgaagtattcaattacgatcggaaaatgcatga
agctttgaagtacctactcggaaagctattcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAATTTCTATGTCGTGTCCTTCG 162 191 1200 Antisense
TATGTCGTGTCCTTCGATTCGAAAA 545 651 1209 Antisense
TACGGTAAACCAGGACACCTATCAA 607 625 1290 Antisense
TGATATCGACCCAACAAATCACCCT 657 563 1350 Antisense
AAATCACCCTGATGCCAGTGAGATA 233 117 1365 Antisense
GAGAAGATATCGGGCACCAGAACAC 27 393 1425 Antisense
GGCACCAGAACACGAGGGGGAACCA 198 535 1437 Antisense
GATACATGCGACTGGTCTTAAGCTC 521 423 1488 Antisense
GTCTTAAGCTCGATCAACATGTGGG 216 467 1502 Antisense
GAAGCTTTGAAGTACCTACTCGGAA 225 343 1618 Antisense
GTACCTACTCGGAAAGCTATTCGGA 38 459 1629 Antisense
Sequence Source Affymetrix Proprietary Database