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[180299_s_at]

Description H19N07.4 /REP_DB=WormBase Gene ID /WP=CE16185 /TR=O45245 /GB=CAB07399.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 75      6grp_total > 08      4grp_total > 22      6grp_highest_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 619
1 2 3 4 range
A 1087
(2.5)
P 		659
(-2.2)
P 		586.3
(-3)
P 		1134.6
(3)
P 		548
B 949.8
(-0.1)
P 		786.6
(-2)
P 		705.1
(-3)
P 		1204.8
(3)
P 		500
C 1167.4
(3)
P 		856.5
(-1.9)
P 		787.7
(-3)
P 		1125.2
(2.3)
P 		380
avr 1068.1
(1.9) 		767.4
(-2) 		693
(-3) 		1154.9
(3) 		462

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 444
1 2 3 4 5 6 range
A 1033.8
(3)
P 		822.5
(-0.4)
P 		812.2
(-0.5)
P 		875.6
(0.5)
P 		657.3
(-3)
P 		925.5
(1.3)
P 		377
B 934
(3)
P 		763.8
(-0)
P 		809.7
(0.8)
P 		765.4
(0)
P 		595
(-3)
P 		795.9
(0.6)
P 		339
C 1039.1
(3)
P 		851.6
(-0.4)
P 		868.6
(-0.1)
P 		906
(0.6)
P 		712.5
(-3)
P 		761.9
(-2.1)
P 		327
avr 1002.3
(3) 		812.6
(-0.3) 		830.2
(0) 		849
(0.4) 		654.9
(-3) 		827.8
(-0) 		347
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 395.8
(3)
P 		143.1
(-3)
P 		153.3
(-2.8)
P 		166.1
(-2.5)
P 		253
B 302.9
(3)
P 		194.3
(-1.7)
P 		163.4
(-3)
P 		256.7
(1)
P 		140
C 386.4
(3)
P 		246.2
(-1.3)
P 		274.6
(-0.4)
P 		189.7
(-3)
P 		197
avr 361.7
(3) 		194.5
(-3) 		197.1
(-2.9) 		204.2
(-2.7) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 208
1 2 3 4 5 6 range
A 190.6
(-2.3)
P 		292.5
(3)
P 		176.9
(-3)
P 		222.1
(-0.7)
P 		198.3
(-1.9)
P 		225.3
(-0.5)
P 		116
B 325
(3)
P 		254.2
(-0.3)
P 		196.6
(-3)
P 		202.7
(-2.7)
P 		241.7
(-0.9)
P 		296.8
(1.7)
P 		128
C 385.2
(3)
P 		259.8
(-0.7)
P 		221.1
(-1.9)
P 		182.2
(-3)
P 		230.6
(-1.6)
P 		255.1
(-0.8)
P 		203
avr 300.3
(3) 		268.8
(1.1) 		198.2
(-3) 		202.3
(-2.8) 		223.5
(-1.5) 		259.1
(0.6) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180299_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12568
Sequence Type Exemplar sequence
Representative Public ID H19N07.4 NCBI
Target Description H19N07.4 /REP_DB=WormBase Gene ID /WP=CE16185 /TR=O45245 /GB=CAB07399.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073427(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073427 NCBI Caenorhabditis elegans H19N07.4 (H19N07.4) mRNA, complete cds. 11/11 A 
SNAP00000011318 ENSEMBL cdna:SNAP chromosome:CEL140:V:11122718:11123897:-1 11/11 None
GENEFINDER00000011319 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11121539:11123897:-1 11/11 None
H19N07.4.2 ENSEMBL cdna:known chromosome:CEL140:V:11122410:11125117:-1 gene:H19N07.4 11/11 None
H19N07.4.1 ENSEMBL cdna:known chromosome:CEL140:V:11122410:11125081:-1 gene:H19N07.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11122717-11125056(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H19N07.4
Entrez Gene 179540 Entrez gene
SwissProt O45245 EMBL-EBI
WormBase CE16185 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:267280_AT diacylglycerol O-acyltransferase / acyl CoA:diacylglycerol acyltransferase (DGAT) at
CANINE:1584419_AT similar to Diacylglycerol O-acyltransferase 1 (Diglyceride acyltransferase) (ACAT related gene product 1) cfa
CANINE_2:CFA.11327.1.A1_AT similar to Diacylglycerol O-acyltransferase 1 (Diglyceride acyltransferase) (ACAT related gene product 1) cfa
CANINE_2:CFA.11327.1.A1_S_AT similar to Diacylglycerol O-acyltransferase 1 (Diglyceride acyltransferase) (ACAT related gene product 1) cfa
DROSOPHILA_2:1636579_S_AT midway dm
DROSGENOME1:154661_AT midway dm
DROSGENOME1:146381_AT midway dm
HG-U133_PLUS_2:203669_S_AT diacylglycerol O-acyltransferase homolog 1 (mouse) hs
HG-U133A_2:203669_S_AT diacylglycerol O-acyltransferase homolog 1 (mouse) hs
HG-U133A:203669_S_AT diacylglycerol O-acyltransferase homolog 1 (mouse) hs
HG-FOCUS:203669_S_AT diacylglycerol O-acyltransferase homolog 1 (mouse) hs
HU35KSUBA:RC_AA478001_AT diacylglycerol O-acyltransferase homolog 1 (mouse) hs
U133_X3P:G7382489_3P_A_AT diacylglycerol O-acyltransferase homolog 1 (mouse) hs
HG-U95AV2:34255_AT diacylglycerol O-acyltransferase homolog 1 (mouse) hs
MOUSE430_2:1445229_AT diacylglycerol O-acyltransferase 1 mm
MOE430B:1445229_AT diacylglycerol O-acyltransferase 1 mm
MU11KSUBA:C76527_RC_G_AT diacylglycerol O-acyltransferase 1 mm
MU11KSUBA:C76527_RC_AT diacylglycerol O-acyltransferase 1 mm
MG-U74AV2:104371_AT diacylglycerol O-acyltransferase 1 mm
MG-U74AV2:162316_F_AT diacylglycerol O-acyltransferase 1 mm
MOE430A:1418295_S_AT diacylglycerol O-acyltransferase 1 mm
MOUSE430A_2:1418295_S_AT diacylglycerol O-acyltransferase 1 mm
MOUSE430_2:1418295_S_AT diacylglycerol O-acyltransferase 1 mm
RG-U34A:RC_AA859529_AT diacylglycerol O-acyltransferase 1 rn
RAE230A:1367915_AT diacylglycerol O-acyltransferase 1 rn
RAT230_2:1367915_AT diacylglycerol O-acyltransferase 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6281 DNA repair inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
4519 endonuclease activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF82410 diacylglycerol acyltransferase [Caenorhabditis elegans] 0.0
blast CAA99773 Hypothetical protein H19N07.4 [Caenorhabditis elegans] emb|CAB07399.1| Hypothetical protein H19N07.4 [Caenorhabditis elegans] ref|NP_505828.3| H19N07.4 [Caenorhabditis elegans] 0.0
blast CAE75170 Hypothetical protein CBG23107 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004299 EMBL-EBI Membrane bound O-acyl transferase, MBOAT 2.6E-53
Pfam IPR004299 EMBL-EBI Membrane bound O-acyl transferase, MBOAT 2.6E-53
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505828.3 9 69-86,112-134,147-169,179-201,284-303,333-355,404-423,427-446,459-481
H19N07.4.2 9 69-86,112-134,147-169,179-201,284-303,333-355,404-423,427-446,459-481
H19N07.4.1 9 69-86,112-134,147-169,179-201,284-303,333-355,404-423,427-446,459-481
SNAP00000011318 7 7-29,39-61,146-165,195-217,266-285,289-308,321-343
GENEFINDER00000011319 7 7-29,39-61,146-165,195-217,266-285,289-308,321-343
Sequence
Target Sequence 
>C. ELEGANS:180299_S_AT
tgggttgttccgactgtccgaaatagtatgaaacctttaagtgaaatggaatactctaga
tgtttggaacgactcttgaaacttgcaattccaaatcatctcatctggcttctattcttc
tacacattcttccattcatttttgaacttgatcgccgagctgcttcgatttgccgatcgt
gagttctacagagacttttggaatgcagagacgataggatatttctggaaatcatggaac
atcccagttcaccgatttgctgttcgccacatctacagtccaatgatgcgtaacaatttc
tcaaaaatgagcgcattcttcgttgtgttcttcgtgtcggcattcttccatgaatatctg
gtttctgtgccattaaagattttccgattgtggtcctactatggaatgatgggacaaatt
cctctatccattatcactgataaagtggtgagaggtggacgtacaggaaacatcatcgtc
tggctctcactgattgttggccaacctcttgcaattctcatgtacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGTTGTTCCGACTGTCCGAAATA 204 551 913 Antisense
TCCAAATCATCTCATCTGGCTTCTA 65 589 1002 Antisense
ATTTGCCGATCGTGAGTTCTACAGA 645 15 1080 Antisense
GAACATCCCAGTTCACCGATTTGCT 63 351 1149 Antisense
TTCGCCACATCTACAGTCCAATGAT 347 697 1175 Antisense
AATGAGCGCATTCTTCGTTGTGTTC 13 165 1218 Antisense
TCGTGTCGGCATTCTTCCATGAATA 388 603 1244 Antisense
GATTTTCCGATTGTGGTCCTACTAT 541 387 1290 Antisense
GACAAATTCCTCTATCCATTATCAC 142 367 1325 Antisense
GTCTGGCTCTCACTGATTGTTGGCC 605 471 1390 Antisense
AACCTCTTGCAATTCTCATGTACGG 556 147 1415 Antisense
Sequence Source Affymetrix Proprietary Database