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[180296_at]

Description Y26D4A.2 /REP_DB=WormBase Gene ID /WP=CE21483 /TR=Q9U2Q4 /GB=CAB54340.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 07      6grp_total > 0      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 43.1
(-3)
A 		71.1
(-0.4)
A 		84.5
(0.8)
M 		107.7
(3)
A 		65
B 55.9
(-3)
A 		67.5
(2.4)
A 		68.8
(3)
A 		61.4
(-0.4)
A 		13
C 67.5
(-1.8)
P 		54.1
(-3)
P 		67
(-1.8)
P 		119
(3)
P 		65
avr 55.5
(-3) 		64.2
(-1.7) 		73.4
(-0.3) 		96
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 30.2
(-3)
A 		74.6
(3)
A 		63.5
(1.5)
A 		54.1
(0.2)
A 		67.4
(2)
P 		36.6
(-2.1)
A 		44
B 51.2
(-0.3)
A 		78.7
(2.1)
P 		88.9
(3)
P 		20
(-3)
A 		71.8
(1.5)
A 		50.4
(-0.4)
A 		69
C 58.7
(0.2)
M 		84.6
(3)
A 		29.1
(-3)
A 		51.1
(-0.6)
A 		58.4
(0.2)
A 		70.8
(1.5)
P 		56
avr 46.7
(-2.2) 		79.3
(3) 		60.5
(0) 		41.7
(-3) 		65.9
(0.9) 		52.6
(-1.3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 15.7
(-2.7)
A 		15.4
(-3)
A 		22.1
(3)
M 		15.8
(-2.6)
A 		7
B 17.8
(3)
A 		16.7
(1.6)
A 		15.9
(0.6)
A 		13.1
(-3)
A 		5
C 22.3
(2.2)
P 		15.5
(-3)
P 		23.4
(3)
P 		20.1
(0.5)
P 		8
avr 18.6
(0.5) 		15.9
(-3) 		20.5
(3) 		16.3
(-2.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 5.6
(-3)
A 		26.5
(3)
A 		13.8
(-0.6)
A 		13.7
(-0.7)
A 		20.3
(1.2)
P 		8.9
(-2.1)
A 		21
B 17.8
(0.1)
A 		26.2
(2.2)
P 		21.6
(1.1)
P 		5.3
(-3)
A 		29.2
(3)
A 		18.8
(0.4)
A 		24
C 21.8
(1.7)
M 		25.8
(3)
A 		7.4
(-3)
A 		10.3
(-2.1)
A 		18.9
(0.8)
A 		23.7
(2.3)
P 		18
avr 15.1
(-1.1) 		26.2
(3) 		14.3
(-1.4) 		9.8
(-3) 		22.8
(1.8) 		17.1
(-0.3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180296_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1428
Sequence Type Exemplar sequence
Representative Public ID Y26D4A.2 NCBI
Target Description Y26D4A.2 /REP_DB=WormBase Gene ID /WP=CE21483 /TR=Q9U2Q4 /GB=CAB54340.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060884(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060884 NCBI Caenorhabditis elegans Y26D4A.2 (Y26D4A.2) mRNA, complete cds. 11/11 None
SNAP00000013477 ENSEMBL cdna:SNAP chromosome:CEL140:I:13075087:13077130:1 11/11 None
GENEFINDER00000013609 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13075087:13077130:1 11/11 None
Y26D4A.2 ENSEMBL cdna:known chromosome:CEL140:I:13075087:13077158:1 gene:Y26D4A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13075017-13077061(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y26D4A.2
Entrez Gene 173178 Entrez gene
SwissProt Q9U2Q4 EMBL-EBI
WormBase CE36230 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54340 Hypothetical protein Y26D4A.2 [Caenorhabditis elegans] ref|NP_493285.2| Y26D4A.2 [Caenorhabditis elegans] 0.0
blast CAE63464 Hypothetical protein CBG07931 [Caenorhabditis briggsae] 1.0E-102
blast CAE63464 Hypothetical protein CBG07931 [Caenorhabditis briggsae] 1.0E-100
blast CAE63463 Hypothetical protein CBG07930 [Caenorhabditis briggsae] 3.0E-96
Sequence
Target Sequence 
>C. ELEGANS:180296_AT
atccgatgtcaactgctacaacgtcataaattcttccgcaataactcaagaactcgccaa
aactatatgcggaatgtggggtggcgcactggtgacggatcggttcgagggttatatgca
acggtgtagcaccggtgatggctggctcgcgggaatgatgtttaattggcctatgccata
tgataagccaatttggggtttcccagcctggatgaagcaaccgctgaagatatgggtcgg
gttagaaaagaatctggttactggagtttgggcatgggcaagacctgattggggttatca
gaatagttacacgtttgacacatgtgatcctgatacagggaagagaccaataacgactac
gcctggtgcaccgatgacttgggcaccaggggagcctaagagtcaagcgggatataattg
tgcctacctcgaatacaaatacaatagtccatggccaggatacgctatggttgccgcgcc
atgcaatgaatcactaccagacatcaatggtttcatgtgtggtgtagatcctgaaggaaa
acaaggtatccctccgatgaaatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCGATGTCAACTGCTACAACGTC 54 39 1038 Antisense
ACAACGTCATAAATTCTTCCGCAAT 163 113 1055 Antisense
GCACTGGTGACGGATCGGTTCGAGG 202 313 1123 Antisense
ATGGCTGGCTCGCGGGAATGATGTT 521 53 1175 Antisense
GGGGTTTCCCAGCCTGGATGAAGCA 109 495 1232 Antisense
GGGCATGGGCAAGACCTGATTGGGG 94 493 1307 Antisense
GTGCACCGATGACTTGGGCACCAGG 178 481 1403 Antisense
AGCGGGATATAATTGTGCCTACCTC 409 81 1443 Antisense
GCCAGGATACGCTATGGTTGCCGCG 163 279 1491 Antisense
GTTGCCGCGCCATGCAATGAATCAC 537 439 1507 Antisense
CAAGGTATCCCTCCGATGAAATCGA 186 183 1579 Antisense
Sequence Source Affymetrix Proprietary Database