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[180294_s_at]

Description C37A2.2 /REP_DB=WormBase Gene ID /WP=CE27747 /TR=O01505 /GB=AAB52447.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 07      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 26.1
(3)
A 		4.6
(-2.5)
A 		2.7
(-3)
A 		13.6
(-0.2)
A 		23
B 2.9
(-3)
A 		3
(-3)
A 		44.8
(3)
A 		12.4
(-1.6)
A 		42
C 28.4
(1.8)
A 		1.9
(-2.8)
A 		1
(-3)
A 		34.9
(3)
A 		34
avr 19.1
(2.6) 		3.2
(-3) 		16.2
(1.6) 		20.3
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 20.1
(-0.7)
A 		32.9
(0.8)
A 		1.3
(-3)
A 		1.6
(-3)
A 		50.6
(2.9)
A 		51.4
(3)
A 		50
B 11.1
(-1.4)
A 		19
(3)
A 		17.8
(2.3)
A 		18.8
(2.9)
A 		8.2
(-3)
A 		11.3
(-1.3)
A 		11
C 27.1
(-0.7)
A 		1.9
(-3)
A 		45.8
(1)
A 		67.5
(3)
A 		2
(-2.9)
A 		1.4
(-3)
A 		66
avr 19.4
(-2.2) 		17.9
(-3) 		21.6
(-1.1) 		29.3
(3) 		20.3
(-1.7) 		21.4
(-1.2) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 9.5
(3)
A 		1
(-2.8)
A 		0.7
(-3)
A 		2
(-2.1)
A 		9
B 0.9
(-2.9)
A 		0.7
(-3)
A 		10.4
(3)
A 		2.6
(-1.8)
A 		10
C 9.4
(3)
A 		0.6
(-2.9)
A 		0.4
(-3)
A 		5.9
(0.7)
A 		9
avr 6.6
(3) 		0.8
(-3) 		3.8
(0.1) 		3.5
(-0.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.7
(-1.6)
A 		11.7
(1.6)
A 		0.3
(-3)
A 		0.4
(-3)
A 		15.3
(3)
A 		12.5
(1.9)
A 		15
B 3.9
(-1.8)
A 		6.3
(3)
A 		4.3
(-1)
A 		5
(0.4)
A 		3.3
(-3)
A 		4.2
(-1.2)
A 		3
C 10
(1.4)
A 		0.6
(-3)
A 		11.7
(2.1)
A 		13.6
(3)
A 		0.6
(-3)
A 		0.5
(-3)
A 		13
avr 5.9
(0) 		6.2
(1.8) 		5.4
(-3) 		6.3
(2.4) 		6.4
(3) 		5.7
(-1.2) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180294_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1419
Sequence Type Exemplar sequence
Representative Public ID C37A2.2 NCBI
Target Description C37A2.2 /REP_DB=WormBase Gene ID /WP=CE27747 /TR=O01505 /GB=AAB52447.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059544(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059544 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-20) (pqn-20) mRNA, complete cds. 11/11 None
GENEFINDER00000014186 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6799159:6805462:1 11/11 None
SNAP00000014181 ENSEMBL cdna:SNAP chromosome:CEL140:I:6801061:6805462:1 11/11 None
C37A2.2 ENSEMBL cdna:known chromosome:CEL140:I:6799394:6805604:1 gene:C37A2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6799322-6805391(+) 93.31 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-20
Ensembl C37A2.2
Entrez Gene 172402 Entrez gene
SwissProt O01505 EMBL-EBI
WormBase CE27747 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1626376_AT dm
DROSGENOME1:148738_AT dm
DROSGENOME1:142630_AT dm
Protein Similarities
Method ID Description E-Value
blast AAB52447 Prion-like-(q/n-rich)-domain-bearing protein protein 20 [Caenorhabditis elegans] ref|NP_491945.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-20) [Caenorhabditis elegans] 0.0
blast AAB52447 Prion-like-(q/n-rich)-domain-bearing protein protein 20 [Caenorhabditis elegans] ref|NP_491945.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-20) [Caenorhabditis elegans] 1.0E-167
blast AAB52447 Prion-like-(q/n-rich)-domain-bearing protein protein 20 [Caenorhabditis elegans] ref|NP_491945.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-20) [Caenorhabditis elegans] 1.0E-133
blast CAE67312 Hypothetical protein CBG12769 [Caenorhabditis briggsae] 3.0E-59
blast CAE67312 Hypothetical protein CBG12769 [Caenorhabditis briggsae] 6.0E-57
blast CAE67312 Hypothetical protein CBG12769 [Caenorhabditis briggsae] 1.0E-56
Sequence
Target Sequence 
>C. ELEGANS:180294_S_AT
gctacgaggaaaccacgaacaacgaaaaaggcagctccagctacaattggaatgcctcaa
ccacctccaccttcgcagattcaacaacaaaatatgcctatgcagcaccaacaaatgcaa
caacatcccaatgctcaaatgatgatgcagcaacaacatcaacatccgggagcaggtgga
catttgcaattgcatccacaaatgcatatgcagatgcttccacagcatcatcaacagcaa
caacatcatgaagaaatgatgatgatgcatcatcaacagcagcagcaactccagcaacag
caacaaatgcatcagatgcctcttcatcacttgccacagcagccgccgccaccatcacag
aatcctcaaaatcctttaccgcaacctccacaagttatgcctacaacgccaacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTACGAGGAAACCACGAACAACGA 88 301 3268 Antisense
ACAACGAAAAAGGCAGCTCCAGCTA 201 111 3286 Antisense
CAGCTACAATTGGAATGCCTCAACC 452 203 3305 Antisense
AAATATGCCTATGCAGCACCAACAA 635 115 3357 Antisense
AACAACATCAACATCCGGGAGCAGG 277 133 3419 Antisense
GCAGGTGGACATTTGCAATTGCATC 690 309 3439 Antisense
TGCATATGCAGATGCTTCCACAGCA 551 577 3470 Antisense
TGCATCAGATGCCTCTTCATCACTT 132 579 3575 Antisense
CAGAATCCTCAAAATCCTTTACCGC 395 205 3625 Antisense
TTACCGCAACCTCCACAAGTTATGC 667 679 3643 Antisense
AAGTTATGCCTACAACGCCAACTTC 251 157 3659 Antisense
Sequence Source Affymetrix Proprietary Database