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[180293_at]

Description Y26D4A.6 /REP_DB=WormBase Gene ID /WP=CE21487 /TR=Q9U2Q0 /GB=CAB54344.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 3.7
(-2.7)
A 		3.4
(-3)
A 		10.4
(3)
A 		5.8
(-0.9)
A 		7
B 13.3
(-0)
A 		22.2
(3)
A 		4.6
(-3)
A 		5.2
(-2.8)
A 		18
C 4.7
(-2.9)
A 		10.9
(-2.4)
A 		3.9
(-3)
A 		72.5
(3)
A 		69
avr 7.2
(-2.7) 		12.2
(-1.4) 		6.3
(-3) 		27.8
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.8
(-2.5)
A 		5
(-3)
A 		15.1
(3)
A 		8.1
(-1.2)
A 		6.6
(-2)
A 		9.8
(-0.1)
A 		10
B 7.3
(3)
A 		2.6
(-3)
A 		6.7
(2.2)
A 		3.5
(-1.9)
A 		5.4
(0.6)
A 		7.2
(2.9)
A 		5
C 3.6
(-2.5)
A 		15
(3)
A 		8.3
(-0.2)
A 		8.4
(-0.2)
A 		7.9
(-0.4)
A 		2.5
(-3)
A 		13
avr 5.6
(-3) 		7.5
(-0.4) 		10
(3) 		6.7
(-1.5) 		6.6
(-1.6) 		6.5
(-1.8) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.3
(-1.2)
A 		0.7
(-3)
A 		2.7
(3)
A 		0.9
(-2.4)
A 		2
B 4.2
(1.2)
A 		5.5
(3)
A 		1.1
(-3)
A 		1.1
(-3)
A 		4
C 1.6
(-2.8)
A 		3.1
(-2)
A 		1.3
(-3)
A 		12.2
(3)
A 		11
avr 2.4
(-1.6) 		3.1
(-0.2) 		1.7
(-3) 		4.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.8
(-1.1)
A 		3.3
(3)
A 		2
(-0.5)
A 		2
(-0.5)
A 		2.4
(0.5)
A 		2
B 2.5
(2.3)
A 		0.9
(-3)
A 		1.6
(-0.7)
A 		0.9
(-3)
A 		2.2
(1.3)
A 		2.7
(3)
A 		2
C 1.3
(-2.2)
A 		4.6
(3)
A 		2.1
(-0.9)
A 		1.7
(-1.6)
A 		2.6
(-0.2)
A 		0.8
(-3)
A 		4
avr 1.6
(-2.3) 		2.4
(3) 		2.3
(2.3) 		1.5
(-3) 		2.3
(2.3) 		2
(0.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180293_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1853
Sequence Type Exemplar sequence
Representative Public ID Y26D4A.6 NCBI
Target Description Y26D4A.6 /REP_DB=WormBase Gene ID /WP=CE21487 /TR=Q9U2Q0 /GB=CAB54344.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060888(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060888 NCBI Caenorhabditis elegans Y26D4A.6 (Y26D4A.6) mRNA, complete cds. 11/11 None
GENEFINDER00000013607 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13089567:13090285:-1 11/11 None
Y26D4A.6 ENSEMBL cdna:known chromosome:CEL140:I:13089567:13090285:-1 gene:Y26D4A.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013482 3/11 Cross Hyb Matching Probes None
SNAP00000013483 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13089497-13090216(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y26D4A.6
Entrez Gene 189547 Entrez gene
SwissProt Q9U2Q0 EMBL-EBI
WormBase CE21487 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54344 Hypothetical protein Y26D4A.6 [Caenorhabditis elegans] ref|NP_493289.1| Y26D4A.6 [Caenorhabditis elegans] 1.0E-102
blast CAE63482 Hypothetical protein CBG07950 [Caenorhabditis briggsae] 3.0E-43
blast CAB60592 Hypothetical protein Y53H1A.3 [Caenorhabditis elegans] ref|NP_492880.1| Y53H1A.3 [Caenorhabditis elegans] 5.0E-27
Sequence
Target Sequence 
>C. ELEGANS:180293_AT
cttgcactttttactattctctacgcatttgcgtcggcagaaaaatgtactgggccccaa
cggcccaaatgtgatgctggatggtacacttcgtatcggccacagggaatttggtgtttg
agggttggaggtagtttaatgtacaaagaagcagcgactcaatgtgcccagtatggagga
gttatttccggtgttcaaaacgattttgagcgtgatttgctggttagagaagctcaacga
cagttggcaggatataaggttccgatgtctggaatgtggttgggagcacagagaaatggt
tcgggcttctattggaccgacgggttcactactggaactgcaggatttacctatggacca
gggcaaccggataacatgaatattgatgcaagggtaccccagacatgtctcatcctaatc
acaatggcaccctcttacactggagtctggactagattcaaaaatggagaacttgatgat
acatggtgcaattcgccttccgatcctccgtacagaatgtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGCACTTTTTACTATTCTCTACG 324 219 22 Antisense
CCCCAACGGCCCAAATGTGATGCTG 400 261 76 Antisense
GCTGGATGGTACACTTCGTATCGGC 202 293 97 Antisense
AGAAGCAGCGACTCAATGTGCCCAG 1 75 168 Antisense
GAAATGGTTCGGGCTTCTATTGGAC 221 361 314 Antisense
ATTGGACCGACGGGTTCACTACTGG 70 3 332 Antisense
GCAAGGGTACCCCAGACATGTCTCA 354 321 409 Antisense
TCATCCTAATCACAATGGCACCCTC 558 617 431 Antisense
CACCCTCTTACACTGGAGTCTGGAC 23 201 449 Antisense
TGATACATGGTGCAATTCGCCTTCC 398 565 498 Antisense
TTCCGATCCTCCGTACAGAATGTAT 203 699 519 Antisense
Sequence Source Affymetrix Proprietary Database