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[180292_at]

Description F19C7.8 /REP_DB=WormBase Gene ID /WP=CE27981 /TR=Q19593 /GB=AAA83512.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 24      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_highest_nonorm > 70      6grp_total > 02      4grp_total > 31      6grp_highest_sub > 02      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 281
1 2 3 4 range
A 461.2
(3)
P 		313.3
(-1.5)
P 		263.4
(-3)
P 		331.6
(-0.9)
P 		198
B 439.9
(3)
P 		180.2
(-3)
P 		204.9
(-2.4)
P 		368.2
(1.3)
P 		260
C 386.2
(3)
P 		256.8
(-1.3)
P 		205.5
(-3)
P 		278.8
(-0.6)
P 		181
avr 429.1
(3) 		250.1
(-2.3) 		224.6
(-3) 		326.2
(-0) 		205

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 373.4
(2.2)
P 		409.7
(3)
P 		321.5
(1)
P 		314.2
(0.8)
P 		306.5
(0.7)
P 		146
(-3)
P 		264
B 306.4
(0.2)
P 		417.2
(3)
P 		308.6
(0.2)
P 		267.1
(-0.9)
P 		296.9
(-0.1)
P 		183.4
(-3)
P 		234
C 330.9
(0.8)
P 		444
(3)
P 		290.4
(0)
P 		135.6
(-3)
P 		332.8
(0.8)
P 		168
(-2.4)
P 		308
avr 336.9
(1) 		423.6
(3) 		306.8
(0.3) 		239
(-1.3) 		312.1
(0.4) 		165.8
(-3) 		258
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 167.9
(3)
P 		68
(-2)
P 		68.9
(-2)
P 		48.5
(-3)
P 		119
B 140.3
(3)
P 		44.5
(-3)
P 		47.5
(-2.8)
P 		78.5
(-0.9)
P 		96
C 127.9
(3)
P 		73.8
(-1)
P 		71.6
(-1.2)
P 		47
(-3)
P 		81
avr 145.4
(3) 		62.1
(-2.7) 		62.7
(-2.7) 		58
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 68.8
(-1.2)
P 		145.7
(3)
P 		70
(-1.1)
P 		79.7
(-0.6)
P 		92.5
(0.1)
P 		35.5
(-3)
P 		110
B 106.6
(0.3)
P 		138.9
(3)
P 		74.9
(-2.4)
P 		70.7
(-2.8)
P 		120.6
(1.4)
P 		68.4
(-3)
P 		71
C 122.7
(2.3)
P 		135.5
(3)
P 		73.9
(-0.4)
P 		27.3
(-3)
P 		107.7
(1.5)
P 		56.2
(-1.4)
P 		108
avr 99.4
(0.2) 		140
(3) 		72.9
(-1.6) 		59.2
(-2.6) 		106.9
(0.7) 		53.4
(-3) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180292_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10776
Sequence Type Exemplar sequence
Representative Public ID F19C7.8 NCBI
Target Description F19C7.8 /REP_DB=WormBase Gene ID /WP=CE27981 /TR=Q19593 /GB=AAA83512.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171323(11), NM_171322(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171323 NCBI Caenorhabditis elegans F19C7.8b (F19C7.8) mRNA, complete cds. 11/11 None
NM_171322 NCBI Caenorhabditis elegans F19C7.8a (F19C7.8) mRNA, complete cds. 11/11 A 
SNAP00000030501 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4610892:4613463:-1 11/11 None
GENEFINDER00000030509 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4610892:4613415:-1 11/11 None
F19C7.8b ENSEMBL cdna:known chromosome:CEL140:IV:4610572:4618781:-1 gene:F19C7.8 11/11 A 
F19C7.8a ENSEMBL cdna:known chromosome:CEL140:IV:4610892:4624109:-1 gene:F19C7.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4611303-4613469(-) 100.0 100.0
Public Domain and Genome References
Ensembl F19C7.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM98032 Hypothetical protein F19C7.8a [Caenorhabditis elegans] ref|NP_741380.1| F19C7.8a [Caenorhabditis elegans] 0.0
blast AAM98033 Hypothetical protein F19C7.8b [Caenorhabditis elegans] ref|NP_741381.1| F19C7.8b [Caenorhabditis elegans] 1.0E-162
blast AAM98032 Hypothetical protein F19C7.8a [Caenorhabditis elegans] ref|NP_741380.1| F19C7.8a [Caenorhabditis elegans] 1.0E-146
blast AAM98033 Hypothetical protein F19C7.8b [Caenorhabditis elegans] ref|NP_741381.1| F19C7.8b [Caenorhabditis elegans] 1.0E-145
blast CAE58554 Hypothetical protein CBG01713 [Caenorhabditis briggsae] 1.0E-109
Sequence
Target Sequence 
>C. ELEGANS:180292_AT
tgaaatcgctctcgctggattgtcaagatatgccgccacgaatcaatcagaatacacgga
gcccattgagatccaaacttgctccacgtgactatcgaaaaccaggcatcaacggctctt
cagacttttcggatgttgaacgatcgtgctcaccaatcgtgaaaagcagacggagcagct
catcagctttacatgccggtggctatattgtgatccacgagtactccccatcgaatggaa
gctctctggtcttaggagagaaggttcgagtggtagacaacggagatccggattggctcc
acggtttccgtctcaatgatagaaccgagcacatgatctctttcccagcaacatgtgtgg
ctcaaatgatggctggcgagcaggcgatgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAATCGCTCTCGCTGGATTGTCA 207 573 137 Antisense
GATTGTCAAGATATGCCGCCACGAA 468 435 154 Antisense
AAACTTGCTCCACGTGACTATCGAA 168 129 211 Antisense
TCAACGGCTCTTCAGACTTTTCGGA 355 627 245 Antisense
GATGTTGAACGATCGTGCTCACCAA 25 409 268 Antisense
ATCAGCTTTACATGCCGGTGGCTAT 207 25 318 Antisense
GAATGGAAGCTCTCTGGTCTTAGGA 111 333 369 Antisense
AACGGAGATCCGGATTGGCTCCACG 470 143 415 Antisense
GAACCGAGCACATGATCTCTTTCCC 238 347 458 Antisense
TCTCTTTCCCAGCAACATGTGTGGC 398 611 473 Antisense
TGATGGCTGGCGAGCAGGCGATGCG 691 565 503 Antisense
Sequence Source Affymetrix Proprietary Database